Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2657 ATGAAAGTAGCAGAACTCCAAGTCCAAGTCCAACACCACCATCACCAGCAGCAACGGCAGAGCAAGCGGAAAGAGACCCAGATGTGCAGGAAGATCCAACTGGGTGTTGCCGATCTCTCTTCGCCCATCTCCTCCGACGACGAGGCTGCCGATGCCCGTGACAAGGTTGACGGCGAGGATCTCTTCATCCCACCTCTAAATTTCGCTATGGTGGATAATGGCATTTTCAGGTCCGGCTTCCCTGAGCCCGCCAACTTCTCCTTTCTGCAAACCCTCGGTCTCCGCTCCATCATATATCTATGTCCTGAGCCTTACCCGGAGGCAAACATGGAGTTCCTGAAGTTAAATGGGATCAAGCTTTATCAATTCGGGATCGAAGGTCACAAGGAACCTTTTGTGAACATCCCAGAGGACACAATCCGTGAAGCACTGAAAGTTGTCCTTGATGTTAAGAACCACCCAGTTTTAATTCACTGTAAGAGGGGGAAGCACCGAACAGGTTGTCTCGTAGGATGCTTGAGAAAACTGCAAAAGTGGTGCTTGTCGTCTGTGTTTGATGAGTACCAGAGGTTTGCGGCTGCCAAGACAAGAGTTTCGGATCAGAGATTTGTGGAGCTGTTTGATACTTCCAGCCTGAAGCATTTGCCCATGTCACTTTCATGTTCGAAGAGGTGA 675 0.4978 MKVAELQVQVQHHHHQQQRQSKRKETQMCRKIQLGVADLSSPISSDDEAADARDKVDGEDLFIPPLNFAMVDNGIFRSGFPEPANFSFLQTLGLRSIIYLCPEPYPEANMEFLKLNGIKLYQFGIEGHKEPFVNIPEDTIREALKVVLDVKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAAAKTRVSDQRFVELFDTSSLKHLPMSLSCSKR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2657 224 PANTHER TYROSINE-PROTEIN PHOSPHATASE 33 213 - -
Glsi08g2657 224 ProSiteProfiles Dual specificity protein phosphatase domain profile. 67 221 IPR020422 GO:0006470|GO:0008138
Glsi08g2657 224 ProSitePatterns Tyrosine specific protein phosphatases active site. 157 167 IPR016130 GO:0016311|GO:0016791
Glsi08g2657 224 PRINTS Plant and fungal dual specificity phosphatase signature 99 112 IPR020428 GO:0016791
Glsi08g2657 224 PRINTS Plant and fungal dual specificity phosphatase signature 118 132 IPR020428 GO:0016791
Glsi08g2657 224 PRINTS Plant and fungal dual specificity phosphatase signature 135 149 IPR020428 GO:0016791
Glsi08g2657 224 PRINTS Plant and fungal dual specificity phosphatase signature 62 79 IPR020428 GO:0016791
Glsi08g2657 224 MobiDBLite consensus disorder prediction 1 27 - -
Glsi08g2657 224 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 63 208 IPR029021 -
Glsi08g2657 224 Gene3D Protein tyrosine phosphatase superfamily 61 211 IPR029021 -
Glsi08g2657 224 CDD PFA-DSP_Siw14 61 208 - -
Glsi08g2657 224 FunFam probable tyrosine-protein phosphatase At1g05000 61 211 - -
Glsi08g2657 224 Pfam Tyrosine phosphatase family 63 214 IPR004861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2657 Glsi-ChrGlsi08 29250565 29253813 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2657 48 224 Protein tyrosine phosphatase (PTP) family AT4G03960 72.881 1.17e-100 288