LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g2615	ATGTCTTCCTCTGCCCAGCTACCGTTAGCTCTTCTTCTGATAATCCTATACAACAGAACTTGCGAGGCAACAGAGTGTTCTACTTTGTGTGGGGGTCATAACGTTAGCTATCCTTTCCGGCTGAAAGGTTATCCAGACCACTGTGGTGACCTGAGGTATAACCTATCTTGCGAGGACAACCTTCTGGTACTGTATTTCAAATCTGGAAAATACTATGTCCAGTCCATTAATTATGGCAACTACACAATCCGACTGAGGGACGCCATTGTTGTGGAATACAACTACTCTTCCCTGCCTCGTTATCCTTTAACTGAGTTCAACTTCAGCTCTGAGGATCCGTATAGCACTACTCAGAGACACTTACTGAATAAATTTTGGGGGATACTACATGAAAATCGACTGACAAAGATCATGATATTCGTTAGCAGTAAACATCCAGTGAATTCCTCTCAGTATGCTGACATAACCCCTTGCATGGATGCTTCAAATGCTTCTGCAGCTTCTTCCTCGTTGTATTTCTATGCCAATATTGGAAGCGAAACTCTAAGGGATCTGGGGTTGGAGGACGGTTGTCGTATAGAGATGATGTATATGACCTCGTGGCCGTCTGCTGTAAGCCAACACACGAACCATTCCTGCACAGACATCCACAATATGCTTGTTTATGGCTTTGAGCTTTCATGGTTGAATAGTTTGTGTCCTAGTTTTGGACATATTGGCTATCTCGATCAACACAACAACCTTCATTGTTACCACATTATTCTAGGTTGTGCTGTCAAATTTGTGCTTGGGGCTCCATTCGTCATCGTGTTTCTGATCTATAAATGGCGACGACGGCATTTATCAATGTATGACAACATTGAAGATTTTCTGCAAGGCGACAACAACATCATGCCTATAAGGTACTCTTACAAAGACATCAAGAAAATGAGTGAAGGGTTCAAAATCAAACTAGGGAAGGGTGGCTATGGCTCTGTCTTCAGAGGAAAACTTCGGAGTGGCCGTCTTGTAGCCGTCAAGATGTTGGATAAGGCCAAAGGCAATGGTCAGGAATTCATTAATGAAGTTGCTACACTTGGTAGAATCCACCACGTTAACGTGGTGCACCTCATTGGTTACTGTATCGAAGGGTCAAAGCGTGCTCTTGTATATGAGTTCATGGAAAATGGATCTCTTGACAAATACATTCATTCCCAAGAAGAGAATGATCAGCCCTTGAATATTGATAAATTGTACGCCATTTCTCTGGGAGTAGCTCGTGGTATTGAATATCTACACAATGGGTGCGACGTGCAAATTCTGCACTTTGATATCAAGCCCCACAACATTCTTCTTGACGACAATTTCAATCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTATCCTACAGACTACAGCATTGTGTCTCTCACAGCAGCAAGAGGAACCATAGGATACATGGCTCCAGAGCTCTTCTACAGAAATGTTGGTGGGGTGTCCTACAAAGCCGATGTCTATAGCTTTGGAATGTTGTTAATGGAGATGGCCAGTAGAAGGAAGAATTTGAATGCATTGGCTGAGCATTCAAGCCAACTTTACTTCCCCTTTTGGGTTTATGATCGGTTACACCAAGGGAAGGAAATTAACACAGTAAATATTGGCACAGATGAGGAAATGACGTTGGCAAAAAAAATGATGATTGTGGCGTTGTGGTGCATCCAGACAAAGCCCAGCGATCGTCCTTCAATGAAAAAAGTTATAGAGATGCTTGAAGGAAAAGTTGAAGACTTGGAAATGCCTCATAAGCCTTACCTATGTCCACAAGATCTACCAGCAACGGATGTTAGAGACCATGCAAACTCAACAAGTTCATCCTCTGATCCAACTGTAAGTGATTCCAAAGAGTCAGTCTCACTTTTAGCCCAAGAGGATGATCTCAGTATATCATCAATCTCGTAG	1941	0.4261	MSSSAQLPLALLLIILYNRTCEATECSTLCGGHNVSYPFRLKGYPDHCGDLRYNLSCEDNLLVLYFKSGKYYVQSINYGNYTIRLRDAIVVEYNYSSLPRYPLTEFNFSSEDPYSTTQRHLLNKFWGILHENRLTKIMIFVSSKHPVNSSQYADITPCMDASNASAASSSLYFYANIGSETLRDLGLEDGCRIEMMYMTSWPSAVSQHTNHSCTDIHNMLVYGFELSWLNSLCPSFGHIGYLDQHNNLHCYHIILGCAVKFVLGAPFVIVFLIYKWRRRHLSMYDNIEDFLQGDNNIMPIRYSYKDIKKMSEGFKIKLGKGGYGSVFRGKLRSGRLVAVKMLDKAKGNGQEFINEVATLGRIHHVNVVHLIGYCIEGSKRALVYEFMENGSLDKYIHSQEENDQPLNIDKLYAISLGVARGIEYLHNGCDVQILHFDIKPHNILLDDNFNPKVSDFGLAKLYPTDYSIVSLTAARGTIGYMAPELFYRNVGGVSYKADVYSFGMLLMEMASRRKNLNALAEHSSQLYFPFWVYDRLHQGKEINTVNIGTDEEMTLAKKMMIVALWCIQTKPSDRPSMKKVIEMLEGKVEDLEMPHKPYLCPQDLPATDVRDHANSTSSSSDPTVSDSKESVSLLAQEDDLSISSIS	646

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g2615	646	Gene3D	Transferase(Phosphotransferase) domain 1	387	595	-	-
	Glsi08g2615	646	FunFam	serine/threonine-protein kinase PBS1-like	284	386	-	-
	Glsi08g2615	646	SMART	serkin_6	312	584	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g2615	646	MobiDBLite	consensus disorder prediction	609	646	-	-
	Glsi08g2615	646	MobiDBLite	consensus disorder prediction	595	646	-	-
	Glsi08g2615	646	Gene3D	Phosphorylase Kinase; domain 1	292	386	-	-
	Glsi08g2615	646	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	284	612	IPR045874	GO:0004672
	Glsi08g2615	646	ProSitePatterns	Protein kinases ATP-binding region signature.	318	340	IPR017441	GO:0005524
	Glsi08g2615	646	FunFam	PR5-like receptor kinase	387	596	-	-
	Glsi08g2615	646	ProSiteProfiles	Protein kinase domain profile.	312	599	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g2615	646	Pfam	Protein kinase domain	317	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g2615	646	SUPERFAMILY	Protein kinase-like (PK-like)	296	585	IPR011009	-
	Glsi08g2615	646	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	433	445	IPR008271	GO:0004672\|GO:0006468
	Glsi08g2615	646	Pfam	Wall-associated receptor kinase galacturonan-binding	26	87	IPR025287	GO:0030247

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g2615	Glsi-ChrGlsi08	26860909	26863651	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g2615	202	599	Receptor kinase-like Gene Family	AT4G18250	44.444	7.95e-110	344

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Glsi08g2615		Pkinase	5.8e-47	CL0016