Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2576 ATGGGAAGTTGCCGAATCAGCACTATGTGGCCTACGGCCTTTTACCTTTTCTTTGTAATCGAAACTGACGGAACTATTGATCTGGTTTTGAGATCCGTTCAGTTGGGTAGATTCGAGGTAGAAATGAGGATTTCATTTTGCAAGAGTATATGGGATTTTGAGCATGTATGGCTGAGAATCTTTTGGGATTATCTACGTCAGCCTTCATTAGACTGTCAGACTCAATTTATTCTACTTTTCCCCTTTCACTTCTTGTATTCAAGACCATTAATTGGAACAAAAAGAAAGAAACAGAAAAGAAATAAAGTGGCCTGCTTTGAAGCCTGCTTGGAATTTTGGTTTCTCTGGCTACTGATCACTGCAATGAACAACAATCTGGCATTTCTTGCTAGAACTATTGCAACAAAATTCCATAGCCCATCTTCTCCATGCCGATTCTATTGTTCACCATCCGCAATGTCTACTCCTGCTTCCAGCAATAAACTCTTTGTTGGAGGGTTGTCATGGTCAGTGGATGAGAAGTCCCTGAAAGATGCTTTCTCTTCGTTTGGGGAGGTCACTGAAGTGAGGATAGTGTATGATAAAGATAGTGGTAGATCTAGAGGATTTGGATTTGTCATATTTTCAAATGAAGATAATGCCAGTTGTGCAAAAGATGCAATGGATGGAAAGGCACTGTTAGGTAGACCATTGAGGATAAATTTTGCTCTTGAGAAGGTCCGTGGTGGACCTGTTGTAGTTCCTCGACTTTCTGATGTTGGACATTTAAGTAGGCATCGCACATAA 786 0.4059 MGSCRISTMWPTAFYLFFVIETDGTIDLVLRSVQLGRFEVEMRISFCKSIWDFEHVWLRIFWDYLRQPSLDCQTQFILLFPFHFLYSRPLIGTKRKKQKRNKVACFEACLEFWFLWLLITAMNNNLAFLARTIATKFHSPSSPCRFYCSPSAMSTPASSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVIFSNEDNASCAKDAMDGKALLGRPLRINFALEKVRGGPVVVPRLSDVGHLSRHRT 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2576 261 SMART rrm1_1 161 234 IPR000504 GO:0003723
Glsi08g2576 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 232 IPR000504 GO:0003723
Glsi08g2576 261 SUPERFAMILY RNA-binding domain, RBD 156 243 IPR035979 GO:0003676
Glsi08g2576 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 238 IPR000504 GO:0003723
Glsi08g2576 261 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 133 239 - -
Glsi08g2576 261 CDD RRM2_NsCP33_like 161 236 - -
Glsi08g2576 261 Gene3D - 138 241 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2576 Glsi-ChrGlsi08 25614619 25623777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2576 162 239 C2H2 Transcription Factor Family AT2G19380 39.744 4.99e-11 60.8