Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2572 ATGAACCAGAACAACAGAACAAGAATCACCCAAATAATGCCTTCCTGCTCCCAATTCCTAACCCATCTGTTCCATTCTTCCATAATTGGCTTTCTCATCCTTTCACCAAGAAGGACAGAAGCAAAAGACCTATTATTCAACTGCACAGGAAACGGAACTTTTGCTGCCAATAGCACCTACCAATTCAATCTAAAAACCCTTTTGCATTCACTTTCCTCCGTAGCTGCTACCAATTCTGCCAGTGAGTTCTACAACACCACAGTAGGCAGCATAAACACCAAGGACACAATCTATGGCCTATACATGTGCAGTGGAGACTTCAATCCACACGTCTGCAGAGAGTGTGTGCTGAAATCGACAAAGAAAATAGAATCACTGTGTCCCTTCAGTGAAGTAGCTGTGACTTGGGATGAAAATTGTTTGGTTAAATACTCCAACCAACTTTTCTTCTCCACCATGGATGAAGATTCTAGGTACTGTGAAGCTAATAGGGAATACTACAGTAGCAACCAATACTACAGAGTACTCATATCTTTGATGAAGGATCTGGTAAACAAAGCCAGCAATGCTCCTACGGGTTCTAAGAAATTTTCTGTGGAGAAAAAAAATGTCTCTGGAGAGACACTGTTGTTTGGCCTTGCTCAGTGCACCCCTGATCTGGCGAGTAATAGTTGCAGGCAGTGCCTTGAGGATGCCATGAATGATCTTCAAAATTCATGTTCTAAAGGCAAGATAGGAGGAAGAGTGCTATATCCCAGTTGTATGGTTAGATATGATCCTTACATATTTTATAATGCTACCCTTCTAGCTACAGATGAAAAAGTTCCACCAGGAAAGGGAAAAAGACCATCACATAAATTTATCATGGCTGCTGTTGCAACTGCTGCTTTACTGGTTATTTTCTCTTTTGGGTGCTGCTTTTTTTATAGGAAAGCAAGGAGGAATCGCAGGGATTCGAAAGAAAATTTCGGAGAAGAGATCAATGCTGAGTTGAAGTCCCTGCAATTTGACTTTAGCACAATTGAAGCTGCAACAAACAAATTTTCTGATCAGAACAAGATAGGGGAAGGTGGTTTTGGAGCGGTTTATAAGGGTATGCTTTTCAATGGACAAGAAATAGCAGTAAAGAGGCTTTCAAGAAGTTCCAGGCAAGGCATATTAGAATTTAAGAATGAAGTTTTGCTAATAGCCAAGCTTCAGCACAGAAACCTTGTGAGATTATTAGGATTTTGCATGAAAGAGGAAGAAAAATTACTCATCTATGAATTTGTGCACAACAAGAGCCTTGATTACTATCTATACAATCCCCAAAGGCAAAGGCATCTAACATGGTCCGAAAGCTACAAAATCATACAAGGGATTGCCAAAGGAATTCTTTATCTCCATGAGGATTCTTGTCTAAAGGTCATACATCGTGATCTTAAACCTAGCAATGTTTTATTAGATGACAAAATGAATCCAAAAATATCAGATTTTGGATTGGCTAGGATTGTTGCAATGGATCAAAGGGAAGGAGAAACTGAAAGAATTTGCGGGACATTTGGTTACATGTCTCCTGAATATGCAATGCATGGTCAATTTTCAGTGAAATCTGATGTGTTCAGCTTTGGAGTCATGGTTCTAGAGATAGTTAGTGGAATAAGAAATGCTTATTTTAATGAACGATATTCTGTTGATGAAGACCTCTTGACCTATGCTTGGAAAAAGTGGAGGGATGAAAAGCCGCTGGAGCTGTTAGATCCAACATTGAAAGAAACATTTTATGAAAATGAGGCTGAAGTCATTAGATGCATCCATATAGGTTTACTTTGTGTTCAAGAAAACCCAGATGAGCGGCCTACGGCAGGAACGATTTCTCTATATTTTAGTTCTTTTTCGGTGGATCTACCTTCGCCCAATGAGCCAGCATTTTTCATGCATGGCAAAAAAAAATCAAGGACGTCTAAGGAGTCAAATTCTGATCTATCTCTGAAATATTCAATAGCATTATCTGTTAGTCAAATTCTTACGACTGAATCTTATTCTTGA 2028 0.392 MNQNNRTRITQIMPSCSQFLTHLFHSSIIGFLILSPRRTEAKDLLFNCTGNGTFAANSTYQFNLKTLLHSLSSVAATNSASEFYNTTVGSINTKDTIYGLYMCSGDFNPHVCRECVLKSTKKIESLCPFSEVAVTWDENCLVKYSNQLFFSTMDEDSRYCEANREYYSSNQYYRVLISLMKDLVNKASNAPTGSKKFSVEKKNVSGETLLFGLAQCTPDLASNSCRQCLEDAMNDLQNSCSKGKIGGRVLYPSCMVRYDPYIFYNATLLATDEKVPPGKGKRPSHKFIMAAVATAALLVIFSFGCCFFYRKARRNRRDSKENFGEEINAELKSLQFDFSTIEAATNKFSDQNKIGEGGFGAVYKGMLFNGQEIAVKRLSRSSRQGILEFKNEVLLIAKLQHRNLVRLLGFCMKEEEKLLIYEFVHNKSLDYYLYNPQRQRHLTWSESYKIIQGIAKGILYLHEDSCLKVIHRDLKPSNVLLDDKMNPKISDFGLARIVAMDQREGETERICGTFGYMSPEYAMHGQFSVKSDVFSFGVMVLEIVSGIRNAYFNERYSVDEDLLTYAWKKWRDEKPLELLDPTLKETFYENEAEVIRCIHIGLLCVQENPDERPTAGTISLYFSSFSVDLPSPNEPAFFMHGKKKSRTSKESNSDLSLKYSIALSVSQILTTESYS 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2572 675 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Glsi08g2572 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Glsi08g2572 675 ProSiteProfiles Protein kinase domain profile. 348 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2572 675 Gene3D - 155 263 IPR038408 -
Glsi08g2572 675 Gene3D - 41 149 IPR038408 -
Glsi08g2572 675 Gene3D Phosphorylase Kinase; domain 1 309 423 - -
Glsi08g2572 675 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 309 423 - -
Glsi08g2572 675 Pfam Salt stress response/antifungal 160 259 IPR002902 -
Glsi08g2572 675 Pfam Salt stress response/antifungal 48 147 IPR002902 -
Glsi08g2572 675 FunFam cysteine-rich receptor-like protein kinase 10 424 629 - -
Glsi08g2572 675 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 85 647 - -
Glsi08g2572 675 Gene3D Transferase(Phosphotransferase) domain 1 424 628 - -
Glsi08g2572 675 Pfam Protein tyrosine and serine/threonine kinase 351 614 IPR001245 GO:0004672|GO:0006468
Glsi08g2572 675 ProSiteProfiles Gnk2-homologous domain profile. 154 263 IPR002902 -
Glsi08g2572 675 SMART serkin_6 348 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2572 675 CDD STKc_IRAK 354 618 - -
Glsi08g2572 675 ProSiteProfiles Gnk2-homologous domain profile. 42 149 IPR002902 -
Glsi08g2572 675 SUPERFAMILY Protein kinase-like (PK-like) 333 650 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2572 Glsi-ChrGlsi08 25521368 25525394 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2572 13 653 Receptor kinase-like Gene Family AT4G05200 44.817 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi08g2572 Pkinase 4.9e-47 CL0016