Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2551 ATGCCATCTGTTTGGTATCAATGCAAAGAATTGAAAGACTTAGAATTATCCGAGAATGGATTCAACAAAGGATACATACCAAGTGATCTTGAAAATCTGACCAACCTCCAATTCTTATATCTCATGAACAACAACTTGGAAGGTGAAATCCCATCATCTCTTTTCAACATTTCTTCCTTGAGAAAAATGAGTCTGAAAAGAAACAATTTACATGGTAAGCTTCCAAAATCAATTGGAAACTGCACATTACTGGAAGAGTTAAATTTAAGTGACAACTCCCTCACAGGTGAAATTCCGTCATCTATCTACAACATGTCTTCTTTGAGAGTAATTGATCTATCAACAAACCATTTACAAGGTGAAATTCCACAAGAGTTGTGCCATAAACTTCCTTCACTTAAAAATTTCTCTTTGGCTGAAAATAAATTACAAGGAAGCATTCCAAAATCAATCAGTAACTGCACATCTTTAAAAGTGTTATACTTAGGTGACAACTCATTCACAGGTTCTATACCCAAGGAGATAGGCAATCTAGATAAACTTCAAGAACTAGATCTGGGTAGTAACCATTTGAGTGGACCTATTCCTTCAAATATTTTCAATATTTCAACATTGAAATTTTTGAATCTTGGAGATAATTACCTGTATGGCTTTCTTCCACCAAATATAGGACGTGGCCTTCCCAATGTAGAGAGACTTTGGTTGCCAAAAAATGAACTGGCTGGAATAATTCCAAAGAGTATATCAAATGCTTCTAAGCTTGTTAGCCTACAGTTATATCTAAATAAATTTAGCGGAGTTATACCCAATACAATTAGAAATTTAGCCAACTTGTACCAATTAAGTTTAAAAGGGAATGATTTGAATGGGTCGATTCCTATTACAATTAAAAAAATAAAAGGTCTTCAATATTTGAATCTTGGTGACAACAAATTGCAAGGATCCATCATAGATGAAATTTGTCAAATCGAAAGTTTGGCTGAGTTGCATCTAGCTAATAACAAGCTATCTGGATTGGTGCCAGAATGCCTTGGGAGTCTCACTTTTTTGCAAAAGCTTGACTTGAGCTCTAACAAACTGATTTCACAAATACCCCATTCTCTTTGGAATCTTAGAGATATCTTGGAGGTAAACTTATCCCCAAACACATTGAGTGTATTTCCTCCACTTGAGATTTCAAACTTAAGAGCAATTGCACTGTTGGACTTGTCAAGAAATCAGATTTTAGGAAACATTCCTATAGCTATTGGAGGCTTGCAAACTTTGGTAAAGCTATCTTTAGCACATAACAAATTGCAAGGGCCTATTCCCGAATCACTTGGAAAGATGATAAGCATAGAGTTTTTGGATCTTTCGCAAAATTATTTGTCTGGTGTGATTCCAAAATCCTTAGAGTCACTTGTCCATCTTAAGTACCTTAATCTATCTTACAATGTCTTGTATGGAGAGATTCCAAATGGTGGGCCTTTTACAAATTTTACAGCTGAATCTTTCATGATGAATGAAGATCTTTGTGGGAAGCCCCAACTACAAGTCAAACCATGTAGAAAGGGAAACAAGCATAGATCAACTAAAAAAATGCTTTTGATCAAATGCTTATTGCCTATCTTGTTGGCAACCATTTTGATTGTTTCATGCTTAGCCTTTCTAAAATATAAGAGAAATCATGTTGGTGATTCAACTAACAAAGGTTTAGTAAATTTGGGAACACCAATCAGGATATCCTACTATGAAATTCTACAAGGAACAAATGGATTCGATGAGACTAATTTTCTTGGTAGGGGAAGTTTTGGATCAGTATTTAAAGGAGTGCTTTCAAGTGAAAAAATAGTTGCAATTAAAATTTTTAATTTAGACTTGGAAGAAGCAGTAAGGAGTTTTGATACTGAATGCATGACTTTGTGCAACTTGCGCCATCGAAATCTCATTAAGATCATCAGTAGTTGCTCAAATCTTGATTGTAAATCTTTAATAATGGAATTTATGCCAAATGGGAGCCTTGATAGATGGTTGTATTCTCATAACTATTACTTAGACTTCTTGCAAAGATTGAACATAATGATTGATGTGGCATCTGCATTGGAGTATCTTCATCATGGTTCTTCAACACCTGTGGTTCATTGTGATGTGAAGCCTAGTAATGTATTGTTGGATGAAGATATGGTAGCTCACCTTACTGATTTTGGTATTTCTAAACTATTGGGTGAAGGGCAATTTGAAATTCATACAAAGACCTTGGCAACTTTTGGCTACATTGCACCAGAGTATGGATCTAAAGGAATTGTTTCCATGAAAGGAGATGTGTATAGCTACGGTATTTTGCTAATGGAAGTGTTTACAAGGAAAAAGCCAACAGACGACATGTTCATTCAAGGTCTAAGTTTGAAAGATTGGGTTAACAAGTCAACACCACATTCAATAACTCATATTATAGATTCCAATTTGTTTCAAGGACACAATCAAAATATTGGTGATATATTATCACATATATCATCAATTTTGGAATTAGCCTTGAATTGTTGCACTGAATTACCTGAAACACGAATCAATATGACAGATATTGTGGTGTCACTGAACAAAATTAAGGTGACGTTTATGCAAAATGGTAGGGGCACTGCTACTTTGAATAACCATTAA 2637 0.3477 MPSVWYQCKELKDLELSENGFNKGYIPSDLENLTNLQFLYLMNNNLEGEIPSSLFNISSLRKMSLKRNNLHGKLPKSIGNCTLLEELNLSDNSLTGEIPSSIYNMSSLRVIDLSTNHLQGEIPQELCHKLPSLKNFSLAENKLQGSIPKSISNCTSLKVLYLGDNSFTGSIPKEIGNLDKLQELDLGSNHLSGPIPSNIFNISTLKFLNLGDNYLYGFLPPNIGRGLPNVERLWLPKNELAGIIPKSISNASKLVSLQLYLNKFSGVIPNTIRNLANLYQLSLKGNDLNGSIPITIKKIKGLQYLNLGDNKLQGSIIDEICQIESLAELHLANNKLSGLVPECLGSLTFLQKLDLSSNKLISQIPHSLWNLRDILEVNLSPNTLSVFPPLEISNLRAIALLDLSRNQILGNIPIAIGGLQTLVKLSLAHNKLQGPIPESLGKMISIEFLDLSQNYLSGVIPKSLESLVHLKYLNLSYNVLYGEIPNGGPFTNFTAESFMMNEDLCGKPQLQVKPCRKGNKHRSTKKMLLIKCLLPILLATILIVSCLAFLKYKRNHVGDSTNKGLVNLGTPIRISYYEILQGTNGFDETNFLGRGSFGSVFKGVLSSEKIVAIKIFNLDLEEAVRSFDTECMTLCNLRHRNLIKIISSCSNLDCKSLIMEFMPNGSLDRWLYSHNYYLDFLQRLNIMIDVASALEYLHHGSSTPVVHCDVKPSNVLLDEDMVAHLTDFGISKLLGEGQFEIHTKTLATFGYIAPEYGSKGIVSMKGDVYSYGILLMEVFTRKKPTDDMFIQGLSLKDWVNKSTPHSITHIIDSNLFQGHNQNIGDILSHISSILELALNCCTELPETRINMTDIVVSLNKIKVTFMQNGRGTATLNNH 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2551 878 SMART LRR_typ_2 33 57 IPR003591 -
Glsi08g2551 878 SMART LRR_typ_2 130 154 IPR003591 -
Glsi08g2551 878 SMART LRR_typ_2 467 491 IPR003591 -
Glsi08g2551 878 SMART LRR_typ_2 347 371 IPR003591 -
Glsi08g2551 878 SMART LRR_typ_2 323 346 IPR003591 -
Glsi08g2551 878 SMART LRR_typ_2 178 202 IPR003591 -
Glsi08g2551 878 SMART LRR_typ_2 443 466 IPR003591 -
Glsi08g2551 878 SMART LRR_typ_2 105 129 IPR003591 -
Glsi08g2551 878 FunFam Serine-threonine protein kinase plant-type 568 661 - -
Glsi08g2551 878 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672|GO:0006468
Glsi08g2551 878 ProSitePatterns Protein kinases ATP-binding region signature. 592 614 IPR017441 GO:0005524
Glsi08g2551 878 Gene3D Ribonuclease Inhibitor 1 126 IPR032675 -
Glsi08g2551 878 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 662 870 - -
Glsi08g2551 878 ProSiteProfiles Protein kinase domain profile. 586 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2551 878 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 226 519 - -
Glsi08g2551 878 SMART serkin_6 586 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2551 878 SUPERFAMILY RNI-like 32 312 - -
Glsi08g2551 878 SUPERFAMILY Protein kinase-like (PK-like) 568 858 IPR011009 -
Glsi08g2551 878 Pfam Protein kinase domain 588 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2551 878 PANTHER OS04G0122200 PROTEIN 231 866 - -
Glsi08g2551 878 Gene3D Ribonuclease Inhibitor 224 524 IPR032675 -
Glsi08g2551 878 SMART LRR_sd22_2 299 322 - -
Glsi08g2551 878 SMART LRR_sd22_2 419 442 - -
Glsi08g2551 878 SMART LRR_sd22_2 347 366 - -
Glsi08g2551 878 SMART LRR_sd22_2 178 204 - -
Glsi08g2551 878 SMART LRR_sd22_2 130 156 - -
Glsi08g2551 878 SMART LRR_sd22_2 33 59 - -
Glsi08g2551 878 SMART LRR_sd22_2 227 253 - -
Glsi08g2551 878 Gene3D Ribonuclease Inhibitor 127 223 IPR032675 -
Glsi08g2551 878 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 225 - -
Glsi08g2551 878 Pfam Leucine rich repeat 131 191 IPR001611 GO:0005515
Glsi08g2551 878 Pfam Leucine rich repeat 421 480 IPR001611 GO:0005515
Glsi08g2551 878 Pfam Leucine rich repeat 325 380 IPR001611 GO:0005515
Glsi08g2551 878 Pfam Leucine rich repeat 59 118 IPR001611 GO:0005515
Glsi08g2551 878 Pfam Leucine rich repeat 228 288 IPR001611 GO:0005515
Glsi08g2551 878 Gene3D Transferase(Phosphotransferase) domain 1 662 872 - -
Glsi08g2551 878 Gene3D Phosphorylase Kinase; domain 1 551 661 - -
Glsi08g2551 878 SUPERFAMILY L domain-like 228 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2551 Glsi-ChrGlsi08 24778005 24793727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2551 11 872 Receptor kinase-like Gene Family AT3G47570 36.717 1.17e-172 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi08g2551 Pkinase 6.1e-43 CL0016