Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2549 ATGCAAATCCCTACTATCCATACCACCGTCGAAATATACAGATTATTGCATTCTAGGCATTACGATTATAGTGTCTCGCAATTGTTATTGGGTGTCACAATTACTGGTGCTCGGCTTAATTCCAACAGCACTGCTTCAGGTGTTGATACTGGCATCACAGGCATTACAGTGGACAAATCAGTGGAGTTCTCATATGAAGAACTAGCTCATGCCACAAATAACTTCAGTATGGCTAATAAAATTGGCCAAGGTGGCTTTGGGGCTGTCTACTATGCAGAGCTGAGAGGAGAGAAAGCTGCAGTCAAAAAGATGGATATGCAAGCATCAAAAGAATTTCTTGCTGAACTGAAAGTGTTAACACATGTTCATCACCTGAACCTGTTATCTGCTTCTGTATGTTGTGGGAGAAATTTGTCCTCTGCCATCCCCGTCATTCCTTGTGTACGCTTGATTGGATATTGTGTTGAGGGTTCTCTTTTCCTTGTCTATGAATACATTGACAATGGAAACTTAAGAGAACATTTACGTGATTCAGGAAGAGAACCCATGTCATGGTCTAGCCGGGTGCAAATTGCTCTAGATTCGGCCAGAGGTCTTGAATATATTCACGAGCATACAGTGCCTATATATATTCATCGTGACATAAAGTCAGCAAATATATTGATAGACAAAAACTTTCACGGAAAGGTTACAGATTTTGGATTAACCAAGCTGACTGAAGTGGGAAGTTCATCAATTCCCACTGGTAATCTTAAGGGCACATTTGGTTACATGCCACCTGATCCTTTAGCAGATGCACATCATGCCGAGACTGGTGGTAGTGCTTCTCCGAAGATAGACGTCTACGCATTCGGAGTTGTTCTTTATGAACTTATATCTGCTAAAGAAGCAGTGATTAAGATCAGTGAATCTAGTGCTGAAAAAAAGGGCCTAGTTACTTTGTTTGATGAGGTTTTTGAGCAGCCTGATCCTACAGAATATCTTCAAAAGCTTGTTGATCCTAGGCTTGGAGATAACTACTCAATTGATTTAGTTTACAAGATGGCCCAACTTGCCAGAATGTGTACAGAGAGAGATCCGCAAAGACGGCCAAGTCTAGGTGGAGGTGTTACTGCTGGAATATATATTGGAGGAGTAATTGGGTCTCTGTTATTAGCTGTTTATATTTATGTTAAATACCAACGAAAGAAGGTAGGCAAGATGACATTTCTGGCAGGAGGTTTTAGGGAGCTTTCAACTCAAGCAGCAAGTGCTGGGTTGGAAACTTCAGAATCTGGTGGTCCTGCTGCTACTGGTGGTCCTACTGGTCTTACAGGTGGATTTGGGGCTGTATATTATGCTGAGCTAAGAGGCCAGAAAACTGCAATCAAGAAGATGGACGTACAAGCATCACAAGAATTTCTTGCTGAGTTGAAGGTTTTAACACATGTTCATCACTTGAATCTGGTTGCAGATTTTGGCTTAAGCAAGCTCATTGAAGTCGGAAATGCCTCTCTTAACACTTGTCTTGTGGGAACATTTGGATACATGTCCCCAGAGTATGCTCAGTATGGGATCACTTCTCCAAAAATAGATGTATATGCTTTTGGAGTTGTCCCTTATGAATTCATTTCTGCTAAAAGTGCTGTGCTGAAGACATGCGAATCTGTTGCTGAATCGAAGGGCCTTTTTGATGAAGTTCTTTGTAAATCCGACACTGTAGAAGGTCTCCGAAAACTTATGGATCCTAGGCTTGGAGAAAACTACCCAGTTGATTCAGTTTACAAGTTGGCCCAACATGCGGGAGCATGTACACAGGATGATCCACATCTACGCCCTAGTATGAGATCTATTGTTGTTGCTCTTACGACACTTTCATCTTCTTCTGAGGATTGTGATGTTGGCTCCCCCTATGAAAATCAAACTTTCATAAATCTATTGTCAGGAAGATAA 1932 0.4151 MQIPTIHTTVEIYRLLHSRHYDYSVSQLLLGVTITGARLNSNSTASGVDTGITGITVDKSVEFSYEELAHATNNFSMANKIGQGGFGAVYYAELRGEKAAVKKMDMQASKEFLAELKVLTHVHHLNLLSASVCCGRNLSSAIPVIPCVRLIGYCVEGSLFLVYEYIDNGNLREHLRDSGREPMSWSSRVQIALDSARGLEYIHEHTVPIYIHRDIKSANILIDKNFHGKVTDFGLTKLTEVGSSSIPTGNLKGTFGYMPPDPLADAHHAETGGSASPKIDVYAFGVVLYELISAKEAVIKISESSAEKKGLVTLFDEVFEQPDPTEYLQKLVDPRLGDNYSIDLVYKMAQLARMCTERDPQRRPSLGGGVTAGIYIGGVIGSLLLAVYIYVKYQRKKVGKMTFLAGGFRELSTQAASAGLETSESGGPAATGGPTGLTGGFGAVYYAELRGQKTAIKKMDVQASQEFLAELKVLTHVHHLNLVADFGLSKLIEVGNASLNTCLVGTFGYMSPEYAQYGITSPKIDVYAFGVVPYEFISAKSAVLKTCESVAESKGLFDEVLCKSDTVEGLRKLMDPRLGENYPVDSVYKLAQHAGACTQDDPHLRPSMRSIVVALTTLSSSSEDCDVGSPYENQTFINLLSGR 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2549 643 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
Glsi08g2549 643 SUPERFAMILY Protein kinase-like (PK-like) 55 366 IPR011009 -
Glsi08g2549 643 SMART serkin_6 75 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2549 643 SUPERFAMILY Protein kinase-like (PK-like) 439 615 IPR011009 -
Glsi08g2549 643 Gene3D Phosphorylase Kinase; domain 1 437 486 - -
Glsi08g2549 643 ProSiteProfiles Protein kinase domain profile. 75 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2549 643 Pfam Protein kinase domain 483 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2549 643 Pfam Protein kinase domain 77 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2549 643 FunFam PTI1-like tyrosine-protein kinase 3 166 376 - -
Glsi08g2549 643 Gene3D Transferase(Phosphotransferase) domain 1 487 634 - -
Glsi08g2549 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Glsi08g2549 643 Gene3D Phosphorylase Kinase; domain 1 60 165 - -
Glsi08g2549 643 Gene3D Transferase(Phosphotransferase) domain 1 166 371 - -
Glsi08g2549 643 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 438 483 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2549 Glsi-ChrGlsi08 24751783 24765643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2549 456 643 Receptor kinase-like Gene Family AT3G21630 50.785 7.14e-48 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Glsi08g2549 Pkinase 3.3e-36 CL0016