Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2546 ATGGAACCCAGATTCCGGTTACCAGTTTTCTTCTTGTTGCTAGCCTCTATATTCTTCGGTGCAGAATCGAAGTGTAAAAAAGGTTGTGATTTGGCTCTAGGCTCCTACTATATGTGGGAAGATCTCGACCTCAACCTGACATATATTACACAGATTATGCAATCCAAGATTCTTAACGATCCTAATGAAATTGTCAGCTACAATAAAGACCAAGTACCCAACAAAGACTCTGTCCCATCCGGTATTAGAGTGAACGTTCCATTCCCTTGCGATTGCATTAATGGTGAATATCTGGGTCACGTATTTGAGTATACACTTCAGCCAGGGGAAACATATACGTCGATTGCGAACCAGAGCTATTCCAATTTGGTCAATGATTCGTGGTTGCAAAGCTTGAACAGCTACCCACCAACTAATATTCCTGATTCTGGAACGCTCAATGTCACGGTTAGCTGTTCGTGTGGGAATAGCCAAGTTTCCAATGAGTATGGGTTGTTCATCACGTACCCACTTAGAGCTGAGGATACTTTGAAGTCAATTGCGAACAAGACGAAACTTGAAGCGGGGTTGCTGCAGAGGTACAACCCAGGTGTTGATTTCAGCAAAGGGAGCGGTCTGGTTTATATACCCGGGAAAGCCAATCAATCTTGGCTTTTTGGCTGTAAGTTTGAGCCACCAAATTGCTTAAAGGGTCTTTTGGACAATCTTTATCTCTTTGAGAATGTCATCCATCTCCTGGATTTTGAACAATCAGCTTATCGTTTAAGTCTATATGGTCCATATAAGCCAGGACAGTCCGTTCTTTACCTAGCTTGGAAAGCTCTTCTGTATTATATATCAAGTAAGAGTTTTGGCATCGGTGATGCATGTAGGGAAAAGATATTAAAGATTTCTGATCAGTTTTGTTTCAAAATGCTCATTTGCACAAGAGGGCTAGCAGGTGGAGGTATTGTTGGAATATCTGTTGGAGTAGTGGCTGGAGTTCTGTTATTGGCAGCCGGTATTTATGTTGGATATTACCGAAAGAAGAAGGCGCAAGAAGAAAAATTGCTCTCTGGAAAATCAAAAGTGTACTCTGCTCAAGTTAGGAAAGATTATTGCGTTCTGGTCCTTCTGGATGTCGCAATTTTAGTGTATGGCAATTATTGTGTATTGCGAGTGGTAATAGGTGTTGCGATTGCTAGTGCTTGCCTTACTGATTCCAACGGTCCTTCTACTAGTGTTGGTACTGGCATCACAGGCATTACTATGGACAAATCAGTGGAGTTCTCCTATGAAGAACTAGCTCATGCCACAAATAACTTCAGTCTTGCTAATAAAATCGGTCAAGGTGGTTTTGGGTCTGTCTACTATGCAGAGCTCAGAGGAGAGAAAGCTGCAGTCAAAAAGATGGATATGCAAGCAGCAAAAGAATTTCGTGCTGAACTGAAAGTGTTAACACATGTTCATCACCTGAACCTGGTACGCTTGATTGGATATTGTGTTGAGGATTCTCTCTTCCTTGTCTATGAATACATTGACAATGGAAACTTGAGCCAACATCTACGTGATTCAGGAAGAGAACCCATGGCATGGTCTACCCGGGTGCAAATTGCTCTGGATTCAGCCAGAGGTCTTGAATACATTCACGAGCATACAGTGCCTGTATATATTCATCGTGACATAAAGTCAGCAAATATATTGATAGACAAAAACTTTTGCGGAAAGGTTGCAGATTTTGGATTGACCAAGCTGACTGAAGTAGGAAGTTCATCAGTTCCCACTGTTAATATTGCGGGCACATTTGGTTACATGCCACCCGAATATGCATTTGGTAGTGTTTCTCCGAAGATAGATGTCTACGCATTCGGAGTTGTTCTCTATGAACTTATCTCTGCTAAAGAAGCAGTGATTAAGATCAGTGAATCTAGTGCTGAAACAAAGGGCCTAATTACTTTGTTTGATGAAGTTTTTGAGCAGCCTGATCCTACAGAATATCTTCAAAAGCTTGTTGATCCTAGGCTTGGAGATAACTACTCAATAGATTCAGTTCACAAGATGGCCCAACTTGCCAGATTGTGTACAGAGAGAGATCCGCAAAGACGTCCAAGTATGAGATCCATTGTGGTTGCTCTAACGGCACTTTCTTCCGCTACTGTGGATTGGGATATTACCTCCTTATACGAAAATCCAACTCTAGTGAATCTGATGTCTGGAAGATAG 2202 0.4173 MEPRFRLPVFFLLLASIFFGAESKCKKGCDLALGSYYMWEDLDLNLTYITQIMQSKILNDPNEIVSYNKDQVPNKDSVPSGIRVNVPFPCDCINGEYLGHVFEYTLQPGETYTSIANQSYSNLVNDSWLQSLNSYPPTNIPDSGTLNVTVSCSCGNSQVSNEYGLFITYPLRAEDTLKSIANKTKLEAGLLQRYNPGVDFSKGSGLVYIPGKANQSWLFGCKFEPPNCLKGLLDNLYLFENVIHLLDFEQSAYRLSLYGPYKPGQSVLYLAWKALLYYISSKSFGIGDACREKILKISDQFCFKMLICTRGLAGGGIVGISVGVVAGVLLLAAGIYVGYYRKKKAQEEKLLSGKSKVYSAQVRKDYCVLVLLDVAILVYGNYCVLRVVIGVAIASACLTDSNGPSTSVGTGITGITMDKSVEFSYEELAHATNNFSLANKIGQGGFGSVYYAELRGEKAAVKKMDMQAAKEFRAELKVLTHVHHLNLVRLIGYCVEDSLFLVYEYIDNGNLSQHLRDSGREPMAWSTRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFCGKVADFGLTKLTEVGSSSVPTVNIAGTFGYMPPEYAFGSVSPKIDVYAFGVVLYELISAKEAVIKISESSAETKGLITLFDEVFEQPDPTEYLQKLVDPRLGDNYSIDSVHKMAQLARLCTERDPQRRPSMRSIVVALTALSSATVDWDITSLYENPTLVNLMSGR 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2546 733 Pfam Protein tyrosine and serine/threonine kinase 437 704 IPR001245 GO:0004672|GO:0006468
Glsi08g2546 733 SUPERFAMILY Protein kinase-like (PK-like) 413 705 IPR011009 -
Glsi08g2546 733 Gene3D Transferase(Phosphotransferase) domain 1 506 719 - -
Glsi08g2546 733 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 8 718 IPR044812 GO:0019199|GO:0045087
Glsi08g2546 733 FunFam LysM receptor kinase 2 414 505 - -
Glsi08g2546 733 Gene3D Phosphorylase Kinase; domain 1 416 505 - -
Glsi08g2546 733 ProSitePatterns Protein kinases ATP-binding region signature. 441 463 IPR017441 GO:0005524
Glsi08g2546 733 SMART serkin_6 435 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2546 733 FunFam PTI1-like tyrosine-protein kinase 3 506 719 - -
Glsi08g2546 733 ProSiteProfiles Protein kinase domain profile. 435 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2546 733 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2546 Glsi-ChrGlsi08 24694632 24711512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2546 311 733 Receptor kinase-like Gene Family AT3G21630 57.210 9.01e-158 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Glsi08g2546 PK_Tyr_Ser-Thr 1e-44 CL0016