Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2543 ATGCCGTCCTCTTCTTTGGACTTCTTCCGCATCTACAGCGATGATAATATTTTACCCGAAGACCTATCGCCAAGGTACACGATAAGCGGATCAGATCCATACTTCTATATCAGATTTATTATTCATGATCAAATTCCTCTTGAGCCTACCTTAGAAGTGGAAGTCTGTTCCTGTGTTCCCTGTGAAATAGTACTCGAAGATGTTCCAGAATACACCCATATGCTCTTATCCGAAATTATTCGTGATGAGCACATCGCAAGAATGACACCCGAGATCGAAGATTACGCTGTATCATTGATCCAACATTATCGTACTAGTTCAGAGACTACCCGCAATCGCTTGTTGACTATATTTGTGGAGATGACAGTTACTCGAGAAGAAGAAGATGGTTCAGAGGCGAACTGGGGCCCTCCGCAGTCCGTGGAACAATTTCCAATGACTTCAGCACGAAAGAAAGCTGTAGAGTCACTCAAGGAAGTGAGAGTGGTCAATGATGGAGCTGAGGTAGAACGATGCAGTATTTGTCTGGAAGATTTTGAAGATGGTGAGGATGCTTTAACAATGCCCTGTGACCATTTCTATCATAAGAATTGTATTGTGAACTGGCTAAACAGACGTCTTACTTGCCCATTGTGTCGCTACAAATTGCCGCTGGTATGA 660 0.4318 MPSSSLDFFRIYSDDNILPEDLSPRYTISGSDPYFYIRFIIHDQIPLEPTLEVEVCSCVPCEIVLEDVPEYTHMLLSEIIRDEHIARMTPEIEDYAVSLIQHYRTSSETTRNRLLTIFVEMTVTREEEDGSEANWGPPQSVEQFPMTSARKKAVESLKEVRVVNDGAEVERCSICLEDFEDGEDALTMPCDHFYHKNCIVNWLNRRLTCPLCRYKLPLV 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2543 219 SMART ringv_2 171 213 IPR011016 GO:0008270
Glsi08g2543 219 Pfam Ring finger domain 171 213 IPR001841 -
Glsi08g2543 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 218 IPR013083 -
Glsi08g2543 219 ProSiteProfiles Zinc finger RING-type profile. 172 213 IPR001841 -
Glsi08g2543 219 CDD RING-H2_PA-TM-RING 172 213 - -
Glsi08g2543 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 113 217 - -
Glsi08g2543 219 SUPERFAMILY RING/U-box 171 217 - -
Glsi08g2543 219 SMART ring_2 172 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2543 Glsi-ChrGlsi08 24587303 24587962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2543 149 217 C3H Transcription Factor Family AT1G18760 42.029 9.45e-15 68.9