Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2530 ATGGCAAAAGAAGGGAAGAAGAAGCCCAAGTCTGGCGGCTTTGAGTCCATGGGTCTGAGCCCTAATGTCTACAGGGGAATCAAGCGCAAAGGCTATAAGGTGCCCACCCCAATTCAGAGGAAAACGATACCCCTCATTCTTTCTGGTGCTGATGTTGTTGCTATGGCTCGCACTGGGTCTGGTAAAACTGCTGCATTTCTTTTGCCCATGCTTCAGCGTTTGAACCAGCATCTTCCTCAGGGTGGGGTTAGAGCTCTCATTTTGTCCCCAACTAGAGATTTGGCGCTTCAGACTTTGAAGTTCACCAAAGAGCTTGGCCACTTCCAAGATCTTCGTCTTAGTTTATTAGTTGGTGGAGATAGTATGGAAAGCCAGTTTGAGGAATTAGCTCAAAATCCTGACATTATAATTGCAACACCTGGTAGGCTTATGCACCATTTGTCTGAAATTGATGACATGTCGCTGCGTACCGTGGAATATGTTGTTTTTGACGAGGCAGATTGTTTATTTGGCATGGGTTTTGCTGAGCAATTGCATCAGATTCTTACACAGCTGGGTGAGAACCGTCAGACCTTGCTTTTCAGTGCTACATTACCCAGTGCCCTTGCTGAATTTGCTAAGGCTGGTTTGCGTGACCCTCAGCTTGTTCGTCTGGATTTGGAACGTAAAATCAGCCCTGACCTGAAGCTTGCCTTTTTTACCCTGAGGCAGGAAGAGAAGTATGCAGCATTACTTTATTTGATTAGGGAGCAAATTGGTTCTGATCAGCAGACACTAATATTTGTATCCACAAAGCATCATGTGGAGTTTCTAAACACATTGTTTAGGGAAGAGGGTATTGAGCCATCTGTATGTTATGGTGACATGGATCAAGATGCTCGCAAAATCCATGTGTCAAGGTTCAGGGCAAGGAAGACAATGTTGTTGATTGTGACGGATGTTGCTGCTCGGGGCATTGACATTCCATTACTTGATAATGTTATCAACTGGGACTTTCCCCCAAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGCTGCAAGGGCAGGTCGTACTGGTACTGCCTATTCTTTTGTGACTTATGAGGATATGCCTTACCTTTTGGATCTTCATTTGTTTCTCTCAAAACCAATCAAAGCTGCTCCCACTGAAGAAGAGGTCCTGCAGGATATGGATGGAGTATTGTCCAAAATTGACCAGGCAATGGCAAATGGAGAAACTGTTTATGGTCGTTTCCCCCAAAAAGTCATTGACCTTGTTTCGGACAGAGTTCGGGAAACCATTGATGCTTCTGCAGAACTGATTTCATTGCAGAAAACCTGTAAAAATGCATTTCGTTTATATTTGAAGACAAAACCCTTACCTTCAAAGGAGTCTATTAGAAGAGTAAAGGATTTGCCCAGTGAGGGGCTGCATCCGATTTTCAAGAATGTATTGGAAACAGGGGAGCTAATGGCGCTTGCTTTTTCAGAGAATTTGAAAAAGTTTAGGCCAAAGCAGACCATTTTGGAAGCTGAAGGTGACGCAGCTAAATCAAAGCATTCACAGGGACCTTCAAGTCAATGGGTTGATGTAATGAAGAGAAAAAGAGCCATTCATGAGAATATTATTAATTTGGTCCATGAGCAGCGCTCTAAGAGTAATGTGGAAAAGGAGGAACTTCAATCGGATATCACTCCTTCCATGGAGAAAGTGAGAAAAGCAGCCTCTGGTTCTAAGAGAAAGCAACAAAGTTTCAAGGATGACGAATATTACATAAGTTCAATACCAAAGAATCATCACATGGAAGCAGGCCTTTCAGTAAGGGCTAACGAAGACTTTTCTTCAAATAGATTGGAAACGGCTGTCCTAGATCTAGTGGCAGACGATAGTGCTGGCATCCAGAAACAAAAATCTGTATATCATTGGGACAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGATCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGGGTGGTGCAAAAGTGAAGGCCACTAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCACATCATAAGATAGCTCTTAAGAGGACAAATAATGATGATGATTCTCACGGATCCACAAGTTTGGCAGGTTATTCAAGGGGCGGTCCCAGAAAATTTAAAGGAAGCAAGAAGCAGCATCCAGTGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATCTAGAGCAAATTCGAAAGGAGAGGCAGAATAAAGCCAACAAACTTTCTTATATGAAGAGCAAGTCTTTAAAGAAGGGTAAACAGTTTGGTAGACACGGGAATAAAGGAAAGGCTGGTGGACACGGGAATAAAGGAAAGACTGGTGGACATGGAAAAAAAGGAAGGGCGAAGTAG 2373 0.4286 MAKEGKKKPKSGGFESMGLSPNVYRGIKRKGYKVPTPIQRKTIPLILSGADVVAMARTGSGKTAAFLLPMLQRLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFQDLRLSLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEIDDMSLRTVEYVVFDEADCLFGMGFAEQLHQILTQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLERKISPDLKLAFFTLRQEEKYAALLYLIREQIGSDQQTLIFVSTKHHVEFLNTLFREEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTYEDMPYLLDLHLFLSKPIKAAPTEEEVLQDMDGVLSKIDQAMANGETVYGRFPQKVIDLVSDRVRETIDASAELISLQKTCKNAFRLYLKTKPLPSKESIRRVKDLPSEGLHPIFKNVLETGELMALAFSENLKKFRPKQTILEAEGDAAKSKHSQGPSSQWVDVMKRKRAIHENIINLVHEQRSKSNVEKEELQSDITPSMEKVRKAASGSKRKQQSFKDDEYYISSIPKNHHMEAGLSVRANEDFSSNRLETAVLDLVADDSAGIQKQKSVYHWDKRSKKYIKLNNGDRVAANGKIKTEGGAKVKATKTGIYKKWKERSHHKIALKRTNNDDDSHGSTSLAGYSRGGPRKFKGSKKQHPVPNAHVRSEIKDLEQIRKERQNKANKLSYMKSKSLKKGKQFGRHGNKGKAGGHGNKGKTGGHGKKGRAK 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2530 790 Pfam DBP10CT (NUC160) domain 618 679 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Glsi08g2530 790 CDD DEADc_DDX54 12 217 IPR033517 -
Glsi08g2530 790 SMART ultradead3 31 238 IPR014001 -
Glsi08g2530 790 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 12 40 IPR014014 GO:0003724
Glsi08g2530 790 Gene3D - 1 219 IPR027417 -
Glsi08g2530 790 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 389 IPR001650 -
Glsi08g2530 790 SMART DBP10CT_2 618 680 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Glsi08g2530 790 Coils Coil 724 744 - -
Glsi08g2530 790 Pfam DEAD/DEAH box helicase 36 203 IPR011545 GO:0003676|GO:0005524
Glsi08g2530 790 MobiDBLite consensus disorder prediction 723 747 - -
Glsi08g2530 790 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 43 216 IPR014001 -
Glsi08g2530 790 SMART helicmild6 269 350 IPR001650 -
Glsi08g2530 790 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 2 683 - -
Glsi08g2530 790 Gene3D - 231 459 IPR027417 -
Glsi08g2530 790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 368 IPR027417 -
Glsi08g2530 790 Pfam Helicase conserved C-terminal domain 240 350 IPR001650 -
Glsi08g2530 790 MobiDBLite consensus disorder prediction 751 772 - -
Glsi08g2530 790 CDD SF2_C_DEAD 235 359 - -
Glsi08g2530 790 MobiDBLite consensus disorder prediction 680 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2530 Glsi-ChrGlsi08 24232647 24247822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2530 14 383 Eukaryotic Initiation Factors Gene Family AT1G72730 33.333 1.38e-59 206