Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2494 ATGCCTACTGGAGCTGTGTTTCAGCGGCCCCCATTGATTTCGGCCGTGAAGAGGCAGCTTAGGGTCAGGACTATATATGAAAGAGTGCTTCTTGAGTATGACTTAGATAAGCATTTGGTTGTGTTTTGGATTTCCTATGAGGGCAGGTACGTTGAGAATGATACTGAGGTAGGGGAGGAAGTGATGCATAGGACTACCAAAGGTGAAGGAATTTCTTTGGGAATTGCAGAGATGACTACTGCAGCAATGGCTACCTGTGATCATGGTGTGGTAGCAAAGATTAAAAGAGTGGTTATGGATCGAGATACCTATCCAAGGAAATGGGGTTTAGGCCCAAAAGCATCCATGAAGAAGAAACTGATTGCAGAAGGGAAGCTAGATTAG 384 0.4479 MPTGAVFQRPPLISAVKRQLRVRTIYERVLLEYDLDKHLVVFWISYEGRYVENDTEVGEEVMHRTTKGEGISLGIAEMTTAAMATCDHGVVAKIKRVVMDRDTYPRKWGLGPKASMKKKLIAEGKLD 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2494 127 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 3 50 IPR004802 GO:0006396
Glsi08g2494 127 Gene3D PUA domain 51 127 IPR036974 GO:0003723
Glsi08g2494 127 Pfam PUA domain 51 97 IPR002478 GO:0003723
Glsi08g2494 127 SUPERFAMILY PUA domain-like 51 105 IPR015947 -
Glsi08g2494 127 SUPERFAMILY Pseudouridine synthase 3 51 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Glsi08g2494 127 ProSiteProfiles PUA domain profile. 51 99 - -
Glsi08g2494 127 Gene3D Pseudouridine synthase 3 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2494 Glsi-ChrGlsi08 23229381 23230017 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2494 3 51 NAC Transcription Factor Family AT3G57150 80.000 2.19e-21 86.7