Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi08g2489 | ATGGGTGTTCTCATTACAGAAGAAGGTGCAAGATCAGAGCACCCTGCTGCAATGAAGTTTTTGATTGCAGGCACTGTCACGATGAAGCGAAGGTCATATGCTCTTTATGTGGGACAGAACAAGAGGTTCATCAATGGTGCATCAATTGTGGGGTCTGCATGGGAAAGTATTTTTGTGCAAAGTGCAAGTTTTTTGATGATGATAACTGGAGGTGCGGAAGAATATTTCCACTGCAATAAATGTGGATGTTGTATCGGTAAGGAGGTGAAAGGTAAACATGTTTGTCGAGAACAATTACTGCACCAAGATTGCCCTGTTTGCTGTGAGTTTCTTTTTGATTCTTTGCAACGCATTACTTTCTTGCAATGTGGACACTCTATTCATGTGGAATGCTTGGCAAAAATGAAGGAGCAAGTTTGGCCCAGATGCCCAGTGTGCTTGAAATCATATTCTGATATGAACTCTGTGTGGAAACTGCTTGATATGCAGGTTGCCATGACACCAATGCCTCAAAACTATCAAAACAAGATGGTTTGTATACTTTGCAATGACTGTGAGGAAGCATCAGAGGCTTATTACCATGTGTTGGGATTGAGGTGCTCCAGATGCAATTCCTACAACACAAGGAGGACACATGGAGGCATTTTTTCATGCTCAGGGACAAGTGCAGATTCTGAGTGA | 681 | 0.4244 | MGVLITEEGARSEHPAAMKFLIAGTVTMKRRSYALYVGQNKRFINGASIVGSAWESIFVQSASFLMMITGGAEEYFHCNKCGCCIGKEVKGKHVCREQLLHQDCPVCCEFLFDSLQRITFLQCGHSIHVECLAKMKEQVWPRCPVCLKSYSDMNSVWKLLDMQVAMTPMPQNYQNKMVCILCNDCEEASEAYYHVLGLRCSRCNSYNTRRTHGGIFSCSGTSADSE | 226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi08g2489 | 226 | SMART | ring_2 | 104 | 146 | IPR001841 | - | |
| Glsi08g2489 | 226 | ProSiteProfiles | Zinc finger RING-type profile. | 104 | 146 | IPR001841 | - | |
| Glsi08g2489 | 226 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 167 | IPR013083 | - | |
| Glsi08g2489 | 226 | Pfam | Zinc-ribbon | 152 | 209 | IPR039512 | - | |
| Glsi08g2489 | 226 | Gene3D | - | 175 | 217 | - | - | |
| Glsi08g2489 | 226 | SUPERFAMILY | RING/U-box | 102 | 154 | - | - | |
| Glsi08g2489 | 226 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 33 | 103 | IPR017921 | - | |
| Glsi08g2489 | 226 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 71 | 212 | - | - | |
| Glsi08g2489 | 226 | SUPERFAMILY | Zinc hairpin stack | 69 | 97 | IPR037275 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi08g2489 | Glsi-ChrGlsi08 | 23018992 | 23024430 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi08g2489 | 74 | 209 | C2H2 Transcription Factor Family | AT3G18290 | 40.441 | 1.73e-28 | 110 |