Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2460 ATGCTTGGAGTAGGAGCTACTGGGGAAGGCATGCAGGCAATCTGTCTGATGTTATTGCTGTTTGGGGTGATTGCATTTGGAAATTCAGATATCGACGCACTACTTGAATTCAAGAAGAGTATTAAGAGTGACCCTTCTGGACTAGTTGTTAATTCTTGGGATTCCAAGTCTTTAGCTACTGATGGATGTCCTCAGAATTGGTATGGGATTTTGTGTAGCGAAGGCAATGTCATATCAATCACTCTGGATAATGCTGGTTTGGTTGGAGAGTTTAATTTTGATGCTATTAATGGCCTCAAAATGCTTCGCAACTTGTCAGTATTGAACAACCAGTTCACAGGAAGTATCTTGCATTTTGGTCCAATGGAGTCACTTGAATCTCTCGATTTATCAGTCAACAAGTTTCGTGGGTTGCTACCCTCTGACTTCCTTCAATTACATAATTTAGTATATTTGAATCTTTCTTCAAATGCATTTGAAGGTGCTCTTCCTGTTGGCTTTGACAAACTTGAGCAGTTGAAGTATTTAGATTTGCACGCTAATAGCTTTTCCGGGGATATCATGCATATTTTTTCTAGTATGGGCACTGTGTTTCATGTTGACCTAAGCAGCAACAGGTTTTCTGGTTCACTGGATTTGGGACTTGGGAACTACTCCTTTCTCTCCTCAATTCAATATTTAAATATTAGCTACAATTCCTTAGTTGGTGAGCTGTTCGCCCATGATGGGTTGCCATACCTGGACAATTTAGAGGTCTTTGATGCTAGTAATAATCAGTTAGTCGGCAATATACCTTCCTTCACATTTGTAGTATCTCTACGGATTCTCCGGCTTGGATGCAACCAGTTATCCGGTTCTCTGCCAGAAGGTTTATTGAAGGAGAGTTCAATGATATTGTCTGAACTGGACCTTAGTCAAAACAAGCTTGAAGGTCCCATTGGAAGTATTACCTCTGTAACTCTGAAGAAGCTTAATATATCTTCAAACAAGCTGTCGGGCCCCTTACCTCTAAAGGTAGGCCACTGTGCCATAATAGATTTAAGTAATAACATGCTGTCAGGTAACTTGTCAAGGATCCAGTATTGGGGTAATTATGTTGAAGTGATTCAGCTAAGTTCAAACTCATTGACAGGAATGCTGCCATACCAAACTCCTCAATTCCTAAGGCTGACTTCACTTAAGATATCCAATAACTCATTAGAGGGCACTCTCCCACCGGTCTTAGGAACATACCCAGAACTAAAAGAGATTGATCTGAGCCATAACATACTTTCTGGGTTCCTCCTTCCATTCTTTTTCACCTCAACCAAATTGACCAAACTTAACCTCTCAAACAACAAGATTTCTGGATCAATATCTATTCAGCAAACTCCAAATAATCCGTTAGTTTATGCTGGAAATTTCAGTATGGTGTCTTTGGATCTTTCATACAACAACTTGAGCGGGCATCTGCCTCCAGAAATAAGTAAGCTTCACAATTTGGAAAATCTCAATCTATGTAATAACAAATTTGAAGGTAGTATTCCTGATGATCTTCCAGCTGAACTGAGAGAGTTCAATGTGTCTTTCAATAATTTTTCTGGTGTTGTGCCTGATAACTTAATGCAGTTTCCTCAATCAGCATTTCATCCAGGAAATTCTTTGCTGATATTTCCGCATTCTCCCTTATCACCGAAAGATGTTGCCAACCTAGGTTTAAGGGAACAAGGGTCACATATAAAATCAGCAATCAGGATTGCCTTGATTGCAAGTTTGGTTTCTGGTGCTTTTGTGATAGCCTTTGTGAGTATAACAATTTATTATAGGGTTCACTGGCAAAAACAAAGGGCTTCTAAACAAACAAGAGCAAAAGATATTGCCCATGAGAGTTCTCCCACACCTAGTAAAGAAGCACATAATAGAAATGTGGAAGCAATATCTTCATCAATTTTCTATCCAAATCCTAGACCTTCATCTGAGAAGGGGTATGCTGATGATGCCAGAAATATTCATGCCATGGTAAAGAAGCCAAAAGATTTTGACCCTCCTGAATTAGCTAATATTGAGGAGGGAATATCTTCTTCATTGTCTTTTTTATCAGCTTCAAATCCTTCATCTTCTAGAAGCCATCCATTTGAGAATCCCGGTGCCCTCAAAGTATGCTCTCCAGATAAATTGGTTGGGGATTTGAATCTATTTGATGGATCCTTGGTGCTCACTGCAGAAGAATTTTCAAGTGCCACAGCAGAAACCATTGGTAGGAGCTGTCATGGAACACTGTACAAAGCTACACTTAACACTGGTCATGTATTGGCTGTCAAATCACTAAGGGATGGAATAGCTAAAGGTAAGAAGGAGTTTGCACGGGAAGTTAAAAAACTCGGCACTATTAAGCATCCGAGTCTGGTTTCTCTTCAGGGTTACTACTTGGGTCCAAAGGAGTATGACAAGTTCATTATATCAAATTATGTCAATGCACATTCTTTGGACTTTTATCTTCATGATAGAAAAAGTGTTCATCCCATGTCTCTTGATGAAAGGCTCAGGGTGGCTGTAGATGTGGCACAATGTCTGCATTACTTACACAATGAGAAAGCCATACCACACGGCAATCTGAAATCCACAAATATTCTACTCGAAATTCCTAACCAGAATGTGCTGCTCACAGATTACAGCCTGCACCGGATATTAACTGCTGCTGGTACAGCTGAGCAAGTTCTAAATGCAGGGACTCTTGGTTACCGGCCTCCCGAGTTTGCTAGCTCAAGCAAACCATGTCCATCCTTGAAGAGTGATGTATATGCATTTGGGGTTATCTTGTTAGAGCTTCTAACAGGAAGAAGTTCTGGGGACATCCTTTCAGGTATCCCTGGGGTTGCTGACCTTGCAGACTGGGTGAGGTTCTTGGCAGAGGAAAATCGTGCCAGCGAGTGCTTTGAGAGGCTGCTCTTGGATAAGCACAGTGGGGAACGCCCATCCAGAGTTCTTGATGATATGCTAAAGGTGGCTCTTAGATGCATCCTCCCAGCATCTGAAAGACCTGACATGAAAACTGCTTTTAAAGAACTTTCAACAATTGAGACGCACTGCTTTGCGGATTGA 3081 0.4086 MLGVGATGEGMQAICLMLLLFGVIAFGNSDIDALLEFKKSIKSDPSGLVVNSWDSKSLATDGCPQNWYGILCSEGNVISITLDNAGLVGEFNFDAINGLKMLRNLSVLNNQFTGSILHFGPMESLESLDLSVNKFRGLLPSDFLQLHNLVYLNLSSNAFEGALPVGFDKLEQLKYLDLHANSFSGDIMHIFSSMGTVFHVDLSSNRFSGSLDLGLGNYSFLSSIQYLNISYNSLVGELFAHDGLPYLDNLEVFDASNNQLVGNIPSFTFVVSLRILRLGCNQLSGSLPEGLLKESSMILSELDLSQNKLEGPIGSITSVTLKKLNISSNKLSGPLPLKVGHCAIIDLSNNMLSGNLSRIQYWGNYVEVIQLSSNSLTGMLPYQTPQFLRLTSLKISNNSLEGTLPPVLGTYPELKEIDLSHNILSGFLLPFFFTSTKLTKLNLSNNKISGSISIQQTPNNPLVYAGNFSMVSLDLSYNNLSGHLPPEISKLHNLENLNLCNNKFEGSIPDDLPAELREFNVSFNNFSGVVPDNLMQFPQSAFHPGNSLLIFPHSPLSPKDVANLGLREQGSHIKSAIRIALIASLVSGAFVIAFVSITIYYRVHWQKQRASKQTRAKDIAHESSPTPSKEAHNRNVEAISSSIFYPNPRPSSEKGYADDARNIHAMVKKPKDFDPPELANIEEGISSSLSFLSASNPSSSRSHPFENPGALKVCSPDKLVGDLNLFDGSLVLTAEEFSSATAETIGRSCHGTLYKATLNTGHVLAVKSLRDGIAKGKKEFAREVKKLGTIKHPSLVSLQGYYLGPKEYDKFIISNYVNAHSLDFYLHDRKSVHPMSLDERLRVAVDVAQCLHYLHNEKAIPHGNLKSTNILLEIPNQNVLLTDYSLHRILTAAGTAEQVLNAGTLGYRPPEFASSSKPCPSLKSDVYAFGVILLELLTGRSSGDILSGIPGVADLADWVRFLAEENRASECFERLLLDKHSGERPSRVLDDMLKVALRCILPASERPDMKTAFKELSTIETHCFAD 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2460 1026 Gene3D Ribonuclease Inhibitor 367 467 IPR032675 -
Glsi08g2460 1026 SUPERFAMILY L domain-like 345 538 - -
Glsi08g2460 1026 PANTHER OS07G0626500 PROTEIN 16 1019 - -
Glsi08g2460 1026 Pfam Leucine Rich repeat 435 450 IPR001611 GO:0005515
Glsi08g2460 1026 Gene3D Transferase(Phosphotransferase) domain 1 818 1024 - -
Glsi08g2460 1026 Pfam Leucine rich repeat N-terminal domain 28 73 IPR013210 -
Glsi08g2460 1026 FunFam Leucine-rich repeat receptor-like protein kinase 724 816 - -
Glsi08g2460 1026 Gene3D Ribonuclease Inhibitor 468 553 IPR032675 -
Glsi08g2460 1026 ProSiteProfiles Leucine-rich repeat profile. 124 145 IPR001611 GO:0005515
Glsi08g2460 1026 Gene3D Phosphorylase Kinase; domain 1 724 816 - -
Glsi08g2460 1026 ProSiteProfiles Protein kinase domain profile. 739 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2460 1026 SUPERFAMILY L domain-like 29 313 - -
Glsi08g2460 1026 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 27 238 - -
Glsi08g2460 1026 Gene3D Ribonuclease Inhibitor 191 366 IPR032675 -
Glsi08g2460 1026 SMART LRR_typ_2 146 169 IPR003591 -
Glsi08g2460 1026 SMART LRR_typ_2 491 515 IPR003591 -
Glsi08g2460 1026 SMART LRR_typ_2 270 294 IPR003591 -
Glsi08g2460 1026 SMART LRR_typ_2 122 145 IPR003591 -
Glsi08g2460 1026 Pfam Protein tyrosine and serine/threonine kinase 742 1013 IPR001245 GO:0004672|GO:0006468
Glsi08g2460 1026 MobiDBLite consensus disorder prediction 611 633 - -
Glsi08g2460 1026 Gene3D Ribonuclease Inhibitor 29 190 IPR032675 -
Glsi08g2460 1026 MobiDBLite consensus disorder prediction 611 628 - -
Glsi08g2460 1026 SUPERFAMILY Protein kinase-like (PK-like) 743 1016 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2460 Glsi-ChrGlsi08 22501165 22508797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2460 28 534 Receptor kinase-like Gene Family AT5G07280 30.769 2.12e-34 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi08g2460 PK_Tyr_Ser-Thr 1.8e-28 CL0016