Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2450 ATGTCTCAACGAATCACATCCGTCAACTTAATCACAGTGTGTCTCAACGGTGAAGATCTATTAACCGTACGTACTGTAGCCCTTTGCGCCTCAGAGGAGTCTTTTGTGCTTGGCGAGGCAAATCAGGATATGGATTCGTTTGATCCAGATGGAAATGGGAGCGAGGACATTTTGCCTCCACCACCTCCCCCTCCGGAAGTCCCACCAAATGTTGTACCAGTGAAAGCAGAAGAGCTCCCTCCCGAACCAGTTAAGAAAAAGGTTTCCCGGGTTCCAATGGCCAGACGTGGTCTGGGAACCAAAGGAAATAAACTATCCCTTCTCACTAATCATTTCAAAGTTAATGTTACTAACAACGATGGCCATTTCTTCCACTACAGTGTATCTCTCTCTTATGAAGATGGGCGCCCTGTAGAAGGTAAGGGCATAGGAAGAAAATTAATTGAAAGAGTGCAGGATACTTATGATTCTGAGCTAGCTGGAAAGGACTTTGCCTATGACGGGGAGAAGAGTTTGTTTACTATTGGGCCTCTTCCTCGAAACAAGCTTGAGTTCACAGTTCTTCTAGAGGAACATACATCGAACAGAAATAATGGAAATTGCAGCCCTGATGGTCATGGAAGTCCAAACGAGAGTGACAGGAAGAGGATGCGGCGCCCATATCGTGCCAAAACATTTAAAGTGGAGATTAGCTTTGCTGCTAAGATTCCTATGCAGGCCATAGTCCAAGCACTACGAGGGCAGGAGTCTGAGAATTTCCAAGAAGCCATAAGAGTGCTTGATATTATATTAAGACAAAATGCTGCTAAGAAAGGTTGCCTTCTTGTTCGCCAGTCCTTCTTTCACAACGAGCCAACAAATTTTGCTGATGTAGGAGGTGGAGTTCTAGGCTGCAGAGGATTCCATTCGAGTTTCAGGACTACACAGAGTGGCTTGTCACTCAACATAGATGTATCAACTACCATGATAATACAACCTGGGCCTGTGGTGGACTTTTTAATTGCCAACCAAAATGTGAGAGATCCTTTTTCCCTTGATTGGGCAAAGGCCAAACGGACTCTTAAAAATTTGAGGATTAAGACTAGCCCCTCCAATCAAGAGTACAAGATAACTGGGCTCAGTGAACTACCATGCCGGCAGCAGACGTTTTCTCTGAAGAACAAGGGTGGAGATGATGGCTCTGTGGAAGTAACTGTTTATGATTATTTTTTAAATTATCGCAAGATAGATCTCCGATATTCTGCTGATCTGCCATGCATTAATGTTGGGAAGCCAAAACGCCCAACTTATCTCCCTCTTGAGCTTTGTTCTTTGGTATCCTTGCAACGTTATACAAAAGCATTGACTACACTTCAAAGAGCTTCACTGGTGGAGAAGTCCAGGCAGAAGCCACAAGAGAGGATGAAGGTTTTGTCTGATGTTCTAAAACTCAGCAAATATGATTCTGAACCCATGCTTCGTAATTGTGGAATTTCAATAAGTACTGGCTTTACACAAGTGGAGGGTCGTGTTTTGCAAGCTCCAAGGTTGAAGTTTGGCAATGGGGAGGATTTTAATCCAAGGAATGGGAGATGGAATTTTAATAATAAGAAATTAGTGCAGCCAACAAAGATAGAGCGGTGGGCTGTGGTGAACTTTTCTGCACGTTGTGATACACGAGGTCTTGTTCGGGATCTGATTAAATGTGGAGAAATGAAAGGAATTCACATAGATGCCCCATTTGATGTATTTGAAGAAAGCCCTCAATTTAGGCGTGCCCCACCTCTGGTTAGAGTGGAGAAGATGTTTGAAGAAATCCAGTCTAAACTTCCTGGGGCACCTCAGTTCCTTCTTTGTCTGCTTCCTGAGCGGAAAAACTGTGATCTTTATGGTCCATGGAAAAAGAAGAATCTTGCAGAGTTTGGAGTTGTTACTCAGTGCATGGCTCCACAAAGGGTCAATGATCAATATCTTACTAATGTGTTACTGAAGATCAATGCTAAGCTGGGTGGGCTGAATTCGTTGTTAGCCATGGAAAGTTCTCCTAATCTTCCTGTTGTTTCCAAAACTCCCACCATAATTCTTGGGATGGATGTGTCACATGGCTCCCCTGGGCAGTCAGATATTCCTTCCATTGCTGCGGTGGTAAGCTCCCGACAGTGGCCTTTGATATCAAAGTATAGGGCATGTGTCCGAACACAGTCTCCAAAGGTTGAAATGATAGATAATTTGTTCAAGCCAGTATCTGAAAAGGAGGATCAAGGCATCATCAGGGAACTTTTGGTTGAATTCTATGTAAGTTCTGGGAAGAGAAAACCAGAAAATATAATCATCTTCAGGGATGGGGTTAGTGAATCACAATTCAATCAAGTTTTGAACATTGAGCTTGATCAAATAATTGAGGCCTGTAAATTTCTTGACGAAAATTGGAACCCCAAATTTGTAGTAATCATTGCTCAGAAAAATCATCACACGAAATTTTTCCAGGGTTCATCTCCTGATAATGTTCCACCTGGAACTGTTATTGACAACAAAATTTGTCATCCACGAAATTATGATTTCTACATGTGTGCACATGCTGGAATGATAGGAACAAGCAGGCCTACACATTACCATGTTTTGTTAGACCAGGTTGGCTTCTCACCAGATGATCTACAGGAGCTTGTGCATTCTCTGTCATATGTGTATCAGCGAAGCACCACTGCTATTTCTGTTGTTGCTCCAATATGCTATGCACACCTTGCTGCCACTCAGTTGGGTCAGTTCATGAAATTTGAGGATAAGTCCGAGACTAATTCAAGCCAAGGCGGGCTGACTTCTGCCGGAGCTGTTTCTGTTCCTCAGCTACCCAAATTGCAGGATAGTGTCTGCAACTCAATGTTCTTCTGTTAA 2871 0.4312 MSQRITSVNLITVCLNGEDLLTVRTVALCASEESFVLGEANQDMDSFDPDGNGSEDILPPPPPPPEVPPNVVPVKAEELPPEPVKKKVSRVPMARRGLGTKGNKLSLLTNHFKVNVTNNDGHFFHYSVSLSYEDGRPVEGKGIGRKLIERVQDTYDSELAGKDFAYDGEKSLFTIGPLPRNKLEFTVLLEEHTSNRNNGNCSPDGHGSPNESDRKRMRRPYRAKTFKVEISFAAKIPMQAIVQALRGQESENFQEAIRVLDIILRQNAAKKGCLLVRQSFFHNEPTNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSLDWAKAKRTLKNLRIKTSPSNQEYKITGLSELPCRQQTFSLKNKGGDDGSVEVTVYDYFLNYRKIDLRYSADLPCINVGKPKRPTYLPLELCSLVSLQRYTKALTTLQRASLVEKSRQKPQERMKVLSDVLKLSKYDSEPMLRNCGISISTGFTQVEGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDTRGLVRDLIKCGEMKGIHIDAPFDVFEESPQFRRAPPLVRVEKMFEEIQSKLPGAPQFLLCLLPERKNCDLYGPWKKKNLAEFGVVTQCMAPQRVNDQYLTNVLLKINAKLGGLNSLLAMESSPNLPVVSKTPTIILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSPKVEMIDNLFKPVSEKEDQGIIRELLVEFYVSSGKRKPENIIIFRDGVSESQFNQVLNIELDQIIEACKFLDENWNPKFVVIIAQKNHHTKFFQGSSPDNVPPGTVIDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDQVGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETNSSQGGLTSAGAVSVPQLPKLQDSVCNSMFFC 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2450 956 Pfam Piwi domain 610 917 IPR003165 GO:0003676
Glsi08g2450 956 Pfam Argonaute linker 2 domain 466 512 IPR032472 -
Glsi08g2450 956 Gene3D paz domain 320 444 - -
Glsi08g2450 956 CDD Piwi_ago-like 484 911 IPR045246 -
Glsi08g2450 956 Gene3D - 676 956 IPR036397 GO:0003676
Glsi08g2450 956 SMART DUF1785_2 274 326 IPR014811 -
Glsi08g2450 956 FunFam Protein argonaute 7 321 444 - -
Glsi08g2450 956 ProSiteProfiles Piwi domain profile. 609 917 IPR003165 GO:0003676
Glsi08g2450 956 SUPERFAMILY PAZ domain 321 480 IPR036085 GO:0005515
Glsi08g2450 956 Pfam PAZ domain 330 456 IPR003100 GO:0005515
Glsi08g2450 956 CDD PAZ_argonaute_like 326 439 - -
Glsi08g2450 956 MobiDBLite consensus disorder prediction 194 219 - -
Glsi08g2450 956 Pfam Argonaute linker 1 domain 276 324 IPR014811 -
Glsi08g2450 956 Pfam Mid domain of argonaute 519 561 IPR032473 -
Glsi08g2450 956 Gene3D - 504 670 - -
Glsi08g2450 956 ProSiteProfiles PAZ domain profile. 351 440 IPR003100 GO:0005515
Glsi08g2450 956 SMART Piwi_a_2 609 917 IPR003165 GO:0003676
Glsi08g2450 956 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 83 919 - -
Glsi08g2450 956 FunFam Protein argonaute 3 677 956 - -
Glsi08g2450 956 SUPERFAMILY Ribonuclease H-like 593 915 IPR012337 -
Glsi08g2450 956 MobiDBLite consensus disorder prediction 42 67 - -
Glsi08g2450 956 Pfam N-terminal domain of argonaute 105 264 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2450 Glsi-ChrGlsi08 22308835 22319506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2450 95 956 Eukaryotic Initiation Factors Gene Family AT5G43810 35.674 2.44e-170 521