Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2439 ATGGCCAAGAAGCGAAAGGTGCGATCTTCTGAAACCGAATCTACCGTGGTCAATGAAGCACAATCCGAAGAGCAGCAAAATTACCCAGAGACAGTGGATGAACAACCCCAGACAGGAGCAGTTCTAGAAGAAGAGAACGAAGAACGAGAAGATATGGCCGTCGATGGTGATACGCAAGAAGAAGCAGAGCAGGAAGACGGAAGCGAACAAGAAAACGCTGATAAAGAAGGAAATGAAGAAGGAGACCCAGAAGAGCAAGAAGGTGAGCCCGTGGAAACTGCAGAAACTTCGAACGATGTAGCCCCATCTGAATCGGCTCAGGTTGAAGTGGATGGAGCTGAAGAAGGTAACGATAATGAAGACGAAGGGGTAGATTTGGACGAGGAGAGTGTGGAGAAGCTTCTTGAGCCCTTTACAAAGGAGCAGCTGCACACTCTTGTTAAGCAAGCTGTGGATAAGTACCCTGATTTCGTGGAGAATGTTCGTCAGCTGGCGGATGTGGACCCTGCCCACCGTAAAATCTTCATCCATGGACTTGGCTGGGACACCACCGCTGAAAGCCTTACTGGTGTGTTTGGGAAGTATGGTGAGATTGAGGATTGTAAGGCGGTCACTGACAAGGTCTCCGGGAAATCAAAGGGTTATGCTTTCATCTTGTTTAAGCACCGAAGTGGGGCACGTAAGGCGCTGAAACAGCCTCAGAAAACGATTGGGAACCGGACTACTTCGTGTCAGTTGGCCTCAGCTGGACCTGTCCAGGCTCCCCCACCTGCGGCGCCACCTGTGTCTGAATATACACAGAGGAAGATCTTTGTGAGCAATAGGACGGTCCATTGGGTCTTGATAAGCAGACAGGGAAGCCTAAGGGATTTGCACTTTTTGTATACAAGTCGGCTGAAGGTGCTAAGAAGGCTTTGGAGGAGCCACACAAGAACTACGAGGGGCATACATTGTATTGTCAGAAGGCAATTGATGGTCCTAAGGGAAATAAGGGATATCATCAACACCAGCATCAGCACCATTCCCATCATCAACATCATCAGCCTCACTACCACTCAAGAAAGGAGAAGAATAAATATTCGTCTAGTGGGCCAGGACCCGGACACCTGA 1110 0.4919 MAKKRKVRSSETESTVVNEAQSEEQQNYPETVDEQPQTGAVLEEENEEREDMAVDGDTQEEAEQEDGSEQENADKEGNEEGDPEEQEGEPVETAETSNDVAPSESAQVEVDGAEEGNDNEDEGVDLDEESVEKLLEPFTKEQLHTLVKQAVDKYPDFVENVRQLADVDPAHRKIFIHGLGWDTTAESLTGVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRSGARKALKQPQKTIGNRTTSCQLASAGPVQAPPPAAPPVSEYTQRKIFVSNRTVHWVLISRQGSLRDLHFLYTSRLKVLRRLWRSHTRTTRGIHCIVRRQLMVLREIRDIINTSISTIPIINIISLTTTQERRRINIRLVGQDPDT 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2439 369 MobiDBLite consensus disorder prediction 111 127 - -
Glsi08g2439 369 MobiDBLite consensus disorder prediction 1 127 - -
Glsi08g2439 369 SUPERFAMILY RNA-binding domain, RBD 169 276 IPR035979 GO:0003676
Glsi08g2439 369 SMART rrm1_1 173 245 IPR000504 GO:0003723
Glsi08g2439 369 MobiDBLite consensus disorder prediction 13 34 - -
Glsi08g2439 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 241 IPR000504 GO:0003723
Glsi08g2439 369 PANTHER GEO13361P1-RELATED 161 259 - -
Glsi08g2439 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 249 IPR000504 GO:0003723
Glsi08g2439 369 Gene3D - 164 251 IPR012677 -
Glsi08g2439 369 MobiDBLite consensus disorder prediction 40 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2439 Glsi-ChrGlsi08 22195778 22196948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2439 121 254 C2H2 Transcription Factor Family AT2G19380 44.030 4.30e-32 125