Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2426 ATGGTCAAAATAAGGACCATAGCATTTATGAGACTGGTTGGTTTTGCAGGTGGCTGGCAGGGCCAGAGTAGTGTACGTTATAAGGATGACACAAACACATGGATCAGGATCCTTTATGGATTTTGCCCTGTGGAGCTTGTGTGTTGCAGAATATTTCAAGTCCTCATAGAATTCTATTTCGGCAAAAATTCTTTACTCCATAATGTTGGAAAACTGTTCTTTGAGGTCCTTTATAAGGATTTTGTAGCAGAGCTTAGAGTTATGGTAGTTCAAATTTCTGTTGTTTTTGGCATAGGATTTCTCATAAGTAAGAGTTTAATTTATCATAAAGTTCAACAATCATTGAGAATGAGTCAGCCTAAAATCAAGCGCCGAGTGGGTAAATATGAGGTAGGGAGGACCATTGGTGAAGGAACATTTGCAAAAGTGAGATTTGCAAGGAACTCAGAGAATGGGGAGCCTGTGGCTCTCAAGATTCTTGACAAAGAGAAGGTTCTCAAGCACAAGATGGCTGAGCAGATCAGGCGGGAAATAGCAACTATGAAGTTAATCAAGCATCCAAATGTTGTTCGATTATATGAGGTCATGGGAAGCAAGAGTAAAATCTATATTGTATTGGAGTTTGTGACTGGTGGGGAGCTCTTTGACAAAATTGTAAACCATGGACGGATGAGTGAAAATGAAGCACGTAGATATTTCCAGCAGCTTATAAATGCTGTTGATTATTGCCATAGCAGGGGTGTCTACCACCGAGACCTAAAGCCAGAAAATTTGTTATTAGATGCTTATGGCAACCTTAAAGTTTCTGATTTTGGGTTAAGTGCACTCTCCCAACAAGTCAGGGATGACGGACTGCTCCATACCACATGCGGAACTCCAAATTATGTTGCTCCTGAGGTACTTAATGATCGAGGCTATGATGGGGCAACTGCAGACTTGTGGTCATGTGGGGTGATTCTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCTAATATTATGAACCTGTATAAAAAAATCTCAGCTGCTGAATTTGCTTGCCCCCCTTGGCTTTCTTTCAGTGCTAGGAAACTGATAACTCAAATCTTGGATCCCAACCCGATGACTCGTATCACTATACCTGAGATTCTAGATGATGAATGGTTTAAGAAAGATTATAAGCCTCCAATTTTCGATGAGAAATGGGAGACGAACCTTGATGATGTAGAAGCCGTCTTTAAAGATTCGGGAGAGCACCATGTGACAGAGAAGAAAGAAGAACAACCAACCGCCATGAATGCATTTGAATTAATCTCCATGTCCAAAGGGCTGAACCTCGAGAATTTGTTTGATATTGAGCAGGGATTTAAAAGGGAAACAAGGTTCACGTCAAAACGCCCAGCCAATGAGATAATCAACAAGATTGAAGAAGCTGCAAAACCTCTTGGTTTTGAAGTGCAGAAAAAAAATTACAAGATGAGGCTTGAAAATGTGAAGGCCGGGAGGAAGGGGAACCTTAATGTTGCCACAGAGATATTTCAAGTGGCGCCTTCTCTTCACATGGTTGAGGTGCGGAAAGCAAAAGGCGATACATTGGAGTTCCACAAGTTCTACAAAAATCTTTCAACCCGTCTTGAGGATGTCGTTTGGAAAACCGAAGATGATATGCAAGAATCAAAGTGA 1668 0.4107 MVKIRTIAFMRLVGFAGGWQGQSSVRYKDDTNTWIRILYGFCPVELVCCRIFQVLIEFYFGKNSLLHNVGKLFFEVLYKDFVAELRVMVVQISVVFGIGFLISKSLIYHKVQQSLRMSQPKIKRRVGKYEVGRTIGEGTFAKVRFARNSENGEPVALKILDKEKVLKHKMAEQIRREIATMKLIKHPNVVRLYEVMGSKSKIYIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNIMNLYKKISAAEFACPPWLSFSARKLITQILDPNPMTRITIPEILDDEWFKKDYKPPIFDEKWETNLDDVEAVFKDSGEHHVTEKKEEQPTAMNAFELISMSKGLNLENLFDIEQGFKRETRFTSKRPANEIINKIEEAAKPLGFEVQKKNYKMRLENVKAGRKGNLNVATEIFQVAPSLHMVEVRKAKGDTLEFHKFYKNLSTRLEDVVWKTEDDMQESK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2426 555 SUPERFAMILY Protein kinase-like (PK-like) 125 408 IPR011009 -
Glsi08g2426 555 Pfam Protein kinase domain 129 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2426 555 CDD STKc_SnRK3 128 383 - -
Glsi08g2426 555 Gene3D Kinase associated domain 1, KA1 421 546 - -
Glsi08g2426 555 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Glsi08g2426 555 ProSiteProfiles Protein kinase domain profile. 129 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2426 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Glsi08g2426 555 ProSiteProfiles NAF domain profile. 422 446 IPR018451 GO:0007165
Glsi08g2426 555 Pfam NAF domain 424 483 IPR004041 GO:0007165
Glsi08g2426 555 Gene3D Transferase(Phosphotransferase) domain 1 209 410 - -
Glsi08g2426 555 FunFam Non-specific serine/threonine protein kinase 120 208 - -
Glsi08g2426 555 CDD CIPK_C 428 542 - -
Glsi08g2426 555 Gene3D Phosphorylase Kinase; domain 1 120 208 - -
Glsi08g2426 555 FunFam Non-specific serine/threonine protein kinase 122 425 - -
Glsi08g2426 555 FunFam Non-specific serine/threonine protein kinase 421 546 - -
Glsi08g2426 555 SMART serkin_6 129 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2426 555 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 120 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2426 Glsi-ChrGlsi08 21524706 21535232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2426 121 527 CBL-interacting serine-threonine protein kinases AT2G26980 81.081 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi08g2426 Pkinase 9.3e-74 CL0016