Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2425 ATGGGGAATTCCTGCATAAAACCGGTTGCTCATGTTTCGTCCTCCAATTTTCCTGGGAGTACAAAGCCTCGAAGTAAGACAAAACATAATTCAAATTCTTCAGAACAAAAAACTGCTTTGCGAGGTCGAGCATCAAGTCTTGACAGAACCATCTCCAATAATCTTAAGTCCTTCAGCTTCAATGATCTAAAGGAAGCCACAAAGAACTTCCGCCGAGAAAATTTAATTGGGGAAGGAGGGTTTGGGTGTGTCTACAAAGGATGGATTGACAATAACACCTTTGCTCCTACAAAACCAGGAAGTGGAATTGTAGTCGCTATTAAGAAGCTTAAGCGAGGAAGCTTTCAGGGCCACAAGGAATGGCTTGCAGAAGTAAATTATCTAGGCCAGCTTCATCATGAAAATCTAGTGAAACTTATTGGTTATTGCTTGGATGATAAAAATAGGCTTCTAGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAGAATCATTTATTTAGAAAAGGTGTTCAACCCATAGGTTGGGTGACACGGATTGATATTGCAGTTGGTGTTGCAAGAGGATTAGCATTCTTGCATAGCTTGGATGCAAATGTCATCTATCGTGATTTAAAGGCTTCAAACATCCTACTAGATTCGGATTTCAATGCAAAGCTTTCAGATTTTGGCTTGGCAAGAGATGGTCCTACTGGAGATAATACTCATGTTTCAACCAGAGTTATCGGAACCCAGGGTTATGCTGCACCAGAATATGTAGCAACAGGTCACTTGACCCCGAGAAGTGATGTCTATAGCTATGGTGTGGTCTTATTAGAGTTACTAACTGGAAGACGTGCATTAGAAGACGATGGACCTGGTTTTTCAGAAGAAACTCTGGTGGACTGGGCAAAACCTTTCCTGAGTGATAGCCGGCGAGTTTTCAGAATCATGGATACTAGGTTGGGTGGTCAATACTCCAAGAAAGGAGCCCAAGCTGCGGCTGCACTTGCATTGCAATGCTTGACCCCCGATCCCAAATATAGACCGCCAATGATAGATGTTCTAGCTGAATTGGAAGGACTCCATTCCTCAAATTCAATCCCAAGGACCCCAAAATCTGGGACTGAGAATCATGCAACCAAGCATTTTAGTCATTCCAAAAAGTCAATAAAAAATGCAAACTAA 1164 0.4175 MGNSCIKPVAHVSSSNFPGSTKPRSKTKHNSNSSEQKTALRGRASSLDRTISNNLKSFSFNDLKEATKNFRRENLIGEGGFGCVYKGWIDNNTFAPTKPGSGIVVAIKKLKRGSFQGHKEWLAEVNYLGQLHHENLVKLIGYCLDDKNRLLVYEFMQKGSLENHLFRKGVQPIGWVTRIDIAVGVARGLAFLHSLDANVIYRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSYGVVLLELLTGRRALEDDGPGFSEETLVDWAKPFLSDSRRVFRIMDTRLGGQYSKKGAQAAAALALQCLTPDPKYRPPMIDVLAELEGLHSSNSIPRTPKSGTENHATKHFSHSKKSIKNAN 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2425 387 CDD STKc_IRAK 76 354 - -
Glsi08g2425 387 SMART serkin_6 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2425 387 Pfam Protein tyrosine and serine/threonine kinase 73 349 IPR001245 GO:0004672|GO:0006468
Glsi08g2425 387 ProSiteProfiles Protein kinase domain profile. 70 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2425 387 MobiDBLite consensus disorder prediction 1 46 - -
Glsi08g2425 387 Gene3D Transferase(Phosphotransferase) domain 1 156 377 - -
Glsi08g2425 387 FunFam Serine/threonine-protein kinase BIK1 36 155 - -
Glsi08g2425 387 PANTHER OS01G0588500 PROTEIN-RELATED 29 355 - -
Glsi08g2425 387 MobiDBLite consensus disorder prediction 356 387 - -
Glsi08g2425 387 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 156 364 - -
Glsi08g2425 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Glsi08g2425 387 MobiDBLite consensus disorder prediction 8 46 - -
Glsi08g2425 387 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Glsi08g2425 387 SUPERFAMILY Protein kinase-like (PK-like) 48 357 IPR011009 -
Glsi08g2425 387 Gene3D Phosphorylase Kinase; domain 1 45 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2425 Glsi-ChrGlsi08 21481328 21485697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2425 23 351 Glycoside Hydrolase AT3G07070 49.102 1.43e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi08g2425 Pkinase 6.7e-47 CL0016