Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2423 ATGGCTATTGCGGCCCCTGGGCAATTGAACCTTACTGAGTACCCTTCGTGGGGATCCAGAAGTGTCGATTGCTTCGAAAAGTTAGAGCAGATTGGCGAGGGAACTTATGGTCAAGTTTACATGGCTAGAGAAATCAAAACAGGTGAAATTGTAGCTCTGAAGAAAATAAGAATGGACAACGAGAGAGAGGGGTTTCCTATAACGGCTATACGTGAAATCAAAATTCTAAAGAAATTACACCATGAAAATGTGATTAAGTTGAAAGAAATTGTGACTTCGCCAGGCCCTGAGAAAGATGAGCAAGGGAAGTCAGATGGCAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTGACAGGTCTTGCAGACCGACCTGGGATGAGATTTACAGTTCCCCAAATTAAGTGTTACATGAGACAGCTTTTGACGGGGCTTCATTATTGTCATGTAAATCAAGTGCTTCATCGCGATATCAAAGGGTCTAATCTTCTTATAGACAATGAAGGCAATCTGAAGCTTGCAGATTTTGGACTTGCACGATCATTCTCTAATGACCATAATGCAAATCTTACAAATCGTGTTATCACATTATGGTACAGACCCCCAGAGTTGCTTTTAGGAACAACAAAGTATGGGCCAGCTGTTGATATGTGGTCTGTTGGTTGCATCTTTGCTGAGCTTCTTCATGGAAAGCCTATCTTCCCTGGAAAAGATGAGCCAGAACAACTAAATAAAATTTTTGAGCTGTGTGGAGCACCAGATGAGGTGAACTGGCCTGGAGTTTCTAAGTCTCCATGGTATAGTCAATTTAAGCCAACAAGACCAATGAAAAGACGTCTGAGGGAAGTTTTCAGACATTTTGATCGCCATGCTTTAGAATTGTTGGAGAGGATGCTGACACTTGATCCTGCTCAGAGAATTACTGCTAAGGATGCACTTGATGCTGAGTATTTCTGGACTGATCCATTGCCATGCGATCCCAAAAGTTTACCAAAGTACGAGTCATCACACGAGTTTCAGACAAAGAAAAAGCGCCAGCAACAACGGCAACATGAAGAAAATGCGAAGCGTCAGAAAATGCAGCACCCACAGCAACACACTCGTCTTCCCCCCATTCAGCAGCAAGGGCAACCACATGGCCAAATGCGGCCAGGGCCTAACCAACCAATTCATGGGTCTCAACCCCAAGTTGCTACAGGACCTAGCCATCATTATGGGAAGCCCCGTGGCCCCTCTGGTGGGCCAGGAAGATACCCCCCTAGTGGGAACCCTGGTGGGGGATACAATCACCCAAATCGTGGAGGCCAAGGCGGAGGAGGTGGTTATGGCAGTGGGCCATATCCTCAAGGCCGGGGAGCACCTTATGGTTCAAGTGGTATGCCTGGTGCTGGTCCTCGTGGTGGAGGTGGCAGTGGCTATGGAGTTGGAGCACCGAGTTATCCCCAAGGTGGTCCATATGGGGGATCAGCAGCTGGTCGTGGTTCAAACATGATGGGTGGAAACCGCAATCAACAGTATGGTTGGCAGCAGTGA 1551 0.4649 MAIAAPGQLNLTEYPSWGSRSVDCFEKLEQIGEGTYGQVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKSDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKSPWYSQFKPTRPMKRRLREVFRHFDRHALELLERMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEENAKRQKMQHPQQHTRLPPIQQQGQPHGQMRPGPNQPIHGSQPQVATGPSHHYGKPRGPSGGPGRYPPSGNPGGGYNHPNRGGQGGGGGYGSGPYPQGRGAPYGSSGMPGAGPRGGGGSGYGVGAPSYPQGGPYGGSAAGRGSNMMGGNRNQQYGWQQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2423 516 SUPERFAMILY Protein kinase-like (PK-like) 18 332 IPR011009 -
Glsi08g2423 516 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Glsi08g2423 516 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Glsi08g2423 516 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2423 516 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2423 516 MobiDBLite consensus disorder prediction 370 406 - -
Glsi08g2423 516 CDD STKc_CDK9_like 25 324 - -
Glsi08g2423 516 FunFam Cyclin-dependent kinase C-2 122 364 - -
Glsi08g2423 516 PANTHER CELL DIVISION PROTEIN KINASE 23 330 - -
Glsi08g2423 516 FunFam Cyclin-dependent kinase C-2 12 121 - -
Glsi08g2423 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Glsi08g2423 516 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Glsi08g2423 516 MobiDBLite consensus disorder prediction 502 516 - -
Glsi08g2423 516 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2423 516 MobiDBLite consensus disorder prediction 335 516 - -
Glsi08g2423 516 MobiDBLite consensus disorder prediction 337 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2423 Glsi-ChrGlsi08 21468722 21478484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2423 1 516 Core Cell Cycle Gene Families AT5G10270 77.586 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi08g2423 Pkinase 3.7e-74 CL0016