Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2415 ATGGCTGTTACCTTCTCCGATCTCCATACCGAATCGGGTCTCAAATCCCTCGACCAATTCCTCTCTGGGAAGACCTACATTTCTGGGGGTCAATTGACGAAGGGCGATATTAAAGTGTACGCAGCTGTTTTGAAGAAGCCGGGTGATTCTTTAACCAATGCCAACAAGTGGTACGATGTTGTCACTTCCCATCTTGCTGGAAGCTTTCCTGGCCAAGCTCAAGGAGTAAGATTCGGTGGTAAAGCTGATTCAGCTCAAGCTGCTCCTGCCAAGGCGGATACTCCTGCTGAAGATGATGATGACCTTGATCTCTTTGGTGATGAGACAGAGGAGGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCAATCCTCCAAGAAGAAAGAGAGTGGAAAATCTTCTGTTCTGCTTGATGTCAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGTAGCATTGAGATGCCCGGTCTATTGTGGGGAGCGTCCAAACTGGCTCCTGTTGGTTATGGGATCAAGAAGCTACAGATCATGCTTACTATTGTCGATGACCTTGTATCTGTGGATTCCCTTATCGAAGAACATCTTACAGTTGAGCCAATCAGCGAGTATGTCCAAAGCTGTGACATTGTTGCATTCAACAAAATCTAG 672 0.4688 MAVTFSDLHTESGLKSLDQFLSGKTYISGGQLTKGDIKVYAAVLKKPGDSLTNANKWYDVVTSHLAGSFPGQAQGVRFGGKADSAQAAPAKADTPAEDDDDLDLFGDETEEDKKAAEEREAAKKQSSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIEMPGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTVEPISEYVQSCDIVAFNKI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2415 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 212 223 IPR001326 GO:0003746|GO:0005853|GO:0006414
Glsi08g2415 223 Gene3D - 127 223 IPR014717 -
Glsi08g2415 223 SUPERFAMILY GST C-terminal domain-like 10 65 IPR036282 -
Glsi08g2415 223 MobiDBLite consensus disorder prediction 108 136 - -
Glsi08g2415 223 SUPERFAMILY eEF-1beta-like 131 223 IPR036219 -
Glsi08g2415 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 98 106 IPR001326 GO:0003746|GO:0005853|GO:0006414
Glsi08g2415 223 CDD EF1B 137 223 IPR014038 GO:0003746|GO:0006414
Glsi08g2415 223 FunFam Elongation factor 1-beta 1 like 128 223 - -
Glsi08g2415 223 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 223 - -
Glsi08g2415 223 Pfam EF-1 guanine nucleotide exchange domain 136 223 IPR014038 GO:0003746|GO:0006414
Glsi08g2415 223 Gene3D - 3 69 - -
Glsi08g2415 223 SMART EF1_GNE_2 134 223 IPR014038 GO:0003746|GO:0006414
Glsi08g2415 223 MobiDBLite consensus disorder prediction 77 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2415 Glsi-ChrGlsi08 21350706 21353181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2415 1 223 Eukaryotic Initiation Factors Gene Family AT5G12110 71.930 9.91e-106 302