Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2412 ATGTCAAGTGGAGCAACACACTGGTGTTTTACCTGCAGGCAGCCAATTGTACTTGAAGGGAGAGATTTCAATTGCCCTTACTGTGATAAAGGCGTTGTAAAAGAACTTCATGAGGTGCAAAGAATTGCATCACAAGATGTCATTTCTTCCCAGCTGGAAGAGTTTCATCAAATGCCGGACATTTTTAATGCTGTAAATACTATGATGGGAAGGAGAGGTACAGAACCAGGATTTGGGCTTATAAATGTTGTTGATAGTATCGTGAGGGAGAGAATGGCTGGGCGAAACCCAAACTTTGACTCTAGAGGGAGATCTGGTTCTGCCCCAGGACAGAGTTGGGGCGTTCAGAGTTCTGGTCCAGTTTTGATATTTCATGGTCAACCTCCTGGATTCACCTTTTCTATTGGTAGTCCTAGAGGTGGACCTAGGGGTGTTGATGTTGGTGACCACTTTATGAGCCATGGACTGGAAGAACTTATTGAGCCCCGCACCGTGAATGATCGGCATGGTCCACCTCCAGCCTCACGTTCTTCAATTGAGGCAATGCCTACTATTAGGATTACACAGGCGCATCTTCGCTCTGATTCACACTGTCCAGTTTGTCAAGACAAATTTGAACTGGGATCTAAGGCTAGGGAGATGCCATGTAACCATGTTTATCATTCTGACTGTATTGTTCCTTGGCTGGTTCTGCATAATTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTCATAGAAATGGAAGCTCTCGTGGTAGTCGAAATTGGGGAGGGAGGAATGCCAACAGCAGGGGTGACAATGATAGCTCCAGGACAAGGGAGCATAGCCAGCAGAGCCAAGGAAGGAGAAATCCATGGTCGTTTTTCAGCTGGCGGTTCCGTTCTTCTAGTTCAAACACTAATCATTATGCTGAGAATAGGGGAAGCACATCTTCAACCGGTCAAAACCAAATTAATGGAACTAATTATAGTGGGTGGCCGTTTGATTACTAA 993 0.4572 MSSGATHWCFTCRQPIVLEGRDFNCPYCDKGVVKELHEVQRIASQDVISSQLEEFHQMPDIFNAVNTMMGRRGTEPGFGLINVVDSIVRERMAGRNPNFDSRGRSGSAPGQSWGVQSSGPVLIFHGQPPGFTFSIGSPRGGPRGVDVGDHFMSHGLEELIEPRTVNDRHGPPPASRSSIEAMPTIRITQAHLRSDSHCPVCQDKFELGSKAREMPCNHVYHSDCIVPWLVLHNSCPVCRVELPPHRNGSSRGSRNWGGRNANSRGDNDSSRTREHSQQSQGRRNPWSFFSWRFRSSSSNTNHYAENRGSTSSTGQNQINGTNYSGWPFDY 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2412 330 FunFam E3 ubiquitin-protein ligase RING1-like 162 245 - -
Glsi08g2412 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 245 IPR013083 -
Glsi08g2412 330 SUPERFAMILY RING/U-box 178 247 - -
Glsi08g2412 330 MobiDBLite consensus disorder prediction 300 324 - -
Glsi08g2412 330 CDD RING-H2_RNF126-like 198 239 - -
Glsi08g2412 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 124 243 - -
Glsi08g2412 330 MobiDBLite consensus disorder prediction 243 283 - -
Glsi08g2412 330 SMART ring_2 198 238 IPR001841 -
Glsi08g2412 330 MobiDBLite consensus disorder prediction 300 330 - -
Glsi08g2412 330 ProSiteProfiles Zinc finger RING-type profile. 198 239 IPR001841 -
Glsi08g2412 330 MobiDBLite consensus disorder prediction 94 114 - -
Glsi08g2412 330 MobiDBLite consensus disorder prediction 100 114 - -
Glsi08g2412 330 MobiDBLite consensus disorder prediction 248 265 - -
Glsi08g2412 330 Pfam Ring finger domain 197 239 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2412 Glsi-ChrGlsi08 21330524 21331516 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2412 142 255 C3H Transcription Factor Family AT5G01980 39.655 3.36e-25 103