Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2410 ATGTCAAGTGGAGCAACACACTGGTGTTATACATGCAGGCAGCCAATTGTGCTTGAAGGGGAAGGTTTCAATTGCCCTGACTGTGATGAAGGCTTTGTGCAAGAACTTGATGAGGTTCAAAGAATTGCACCACAAGATGTCATTTCTTCAGAGTTTCATCAAATACCAGACATTGTTAATGCTATGCATGCTATGATGGGGAGGAGAGGTTCGGATCCAAGATTTGGGCTTATAGATGCTTTTGATAGTATCGTGAGGCAGAGAATGGCTGGACGAAACCCAAACTTTGATGTTAGAGGGAGATCTGGTTCTGCCCCAGAACAGAGTTGGGGCGTTTATAGTTCTGGTCCAATTTTGATATTTCATGGTCAACCTCCTGGATTCACCTTTTCTAATGGTGGTCCTAGAGGTGGTATGAGGGGTGTTGATGTTGGTGACTACTTTATGGGCCCTGGACTGGAAGAACTTATTGAGCACCTCACCACAAATGATCGGCATGGTCCGCCCCCAGCCTCAAGTTCTTCAATTGATGCAATGCCTACTATTAGGATTACACAGGCGCATCTTCGCTCTGATTCACACTGTCCAGTTTGTCAAGACAAATTTGAACTGGGCTCTTATGCTAGGGAGATGCCATGTAACCATATTTATCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAATTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTCATGGAAATGCAAGCTCTCGTGGTAGTCGAAATTGGGGAGGGAGGAATGCCAACAGCAGGGGTGACAATGATAGCTCCAGGACGAGGGAGCATAGCCAGCAGAGCCAAGGAAGGAGAAATCCATGGTCGTTTTTGTGGCCGTTCCGTTCTTCTAGTTCAAACACTAATCATTATGCTGAGAATGGGGGAAGCACATCTTCAACCAGTCATGACCAGAATAATGGAACTAATTATAGTGGGTGGCACTTTGATTACTAA 981 0.4546 MSSGATHWCYTCRQPIVLEGEGFNCPDCDEGFVQELDEVQRIAPQDVISSEFHQIPDIVNAMHAMMGRRGSDPRFGLIDAFDSIVRQRMAGRNPNFDVRGRSGSAPEQSWGVYSSGPILIFHGQPPGFTFSNGGPRGGMRGVDVGDYFMGPGLEELIEHLTTNDRHGPPPASSSSIDAMPTIRITQAHLRSDSHCPVCQDKFELGSYAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPHGNASSRGSRNWGGRNANSRGDNDSSRTREHSQQSQGRRNPWSFLWPFRSSSSNTNHYAENGGSTSSTSHDQNNGTNYSGWHFDY 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2410 326 SMART ring_2 195 235 IPR001841 -
Glsi08g2410 326 CDD RING-H2_RNF126-like 195 236 - -
Glsi08g2410 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 95 240 - -
Glsi08g2410 326 MobiDBLite consensus disorder prediction 245 262 - -
Glsi08g2410 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 242 IPR013083 -
Glsi08g2410 326 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Glsi08g2410 326 FunFam E3 ubiquitin-protein ligase RING1-like 159 242 - -
Glsi08g2410 326 MobiDBLite consensus disorder prediction 276 326 - -
Glsi08g2410 326 Pfam Ring finger domain 194 236 IPR001841 -
Glsi08g2410 326 SUPERFAMILY RING/U-box 175 242 - -
Glsi08g2410 326 MobiDBLite consensus disorder prediction 243 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2410 Glsi-ChrGlsi08 21326558 21327538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2410 141 252 C3H Transcription Factor Family AT5G01980 41.228 1.20e-25 105