Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2406 ATGGAGTGTATAAAAGAAGGGTACGGTCTGGGTTATTCTTTATTTCTGGGGTTTCCTTCTTTTTCTGTTTCTTTTTGTCTTGGGAATGTTGAGGATTTTGACGATATGAAGAAGAAACTCGATACACGTTTCCCCGCTGCTCGGATTAAGAAAATTATGCAAACTGATGAGGATATAGGGAAGATTGCTATGGCTGTGCCTCTTCTTGTTTCTAAAGCACTAGAACTCTTTCTGCAAGATTTATGTAATCGGACATATGATATAACTTTGACGAGAGGGGCAAAGACCATGAATTCTTTTCATTTAAAACAGTGTGTACAGACTTATAATGTCTTTGATTTTCTGAAAGATATTGTCAGCAAGGTTCCTGATTTAGGCGGTTCTGTTGCTAATGGTGATGATCATACTGTCAGTAAGAGAAGGAAAGTTGATGATGATGACCATGACAGCGATGATGACCCAAAAAAAAATAAGATGCCGGAGCCGGCTCATACCACTAGTAGAGGAAGAGGTAGGGGTAGAGGCAGGGGACGTGGGCGAGGAAGTAGAACAGTAGATCGAGAGATGACTACACAACATGTCAAGTATGAAAATGATCCTGATGCATTGAAGCAAAATGGCAAGCATACGCAAAGCAATGAAAGCCTGGAAAATGGTACAGAACATGAAGTGAAGACGATTGTTCCTGATAGAAAAACAGCAGAAGTGTGCATTAGAAATTTTGACTTAAATATGGACCCGGATGAGAATGGGGATTCGCCCACCGTTTTAGCACCAGCCCCAGCCAGTTTATCTCCAAAACCAAGTCCAGAAATTAAGCATGAGGAATACCCTGGCTGGTCCTTGTCTGATATGGAAAAAATGGACATCGACCCGATGCAACTGGTCAACTTAAATAGAGATGAAGATGAGGAAGATTATGACGAAGAAACTTAA 936 0.4092 MECIKEGYGLGYSLFLGFPSFSVSFCLGNVEDFDDMKKKLDTRFPAARIKKIMQTDEDIGKIAMAVPLLVSKALELFLQDLCNRTYDITLTRGAKTMNSFHLKQCVQTYNVFDFLKDIVSKVPDLGGSVANGDDHTVSKRRKVDDDDHDSDDDPKKNKMPEPAHTTSRGRGRGRGRGRGRGSRTVDREMTTQHVKYENDPDALKQNGKHTQSNESLENGTEHEVKTIVPDRKTAEVCIRNFDLNMDPDENGDSPTVLAPAPASLSPKPSPEIKHEEYPGWSLSDMEKMDIDPMQLVNLNRDEDEEDYDEET 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2406 311 Gene3D Histone, subunit A 30 121 IPR009072 GO:0046982
Glsi08g2406 311 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 35 161 - -
Glsi08g2406 311 MobiDBLite consensus disorder prediction 125 228 - -
Glsi08g2406 311 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 106 IPR003958 -
Glsi08g2406 311 MobiDBLite consensus disorder prediction 244 285 - -
Glsi08g2406 311 MobiDBLite consensus disorder prediction 179 204 - -
Glsi08g2406 311 SUPERFAMILY Histone-fold 37 126 IPR009072 GO:0046982
Glsi08g2406 311 MobiDBLite consensus disorder prediction 134 168 - -
Glsi08g2406 311 FunFam dr1-associated corepressor homolog 36 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2406 Glsi-ChrGlsi08 21289165 21292385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2406 36 300 CCAAT-HAP5 Transcription Factor Family AT3G12480 41.696 2.98e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Glsi08g2406 CBFD_NFYB_HMF 9.4e-18 CL0012