Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2384 ATGGCGTTCCTTCCTATTGACTTTCATATTCACAGTGATGATCACATTTTAGCCCTCGACGAAGAAGACGGAGATCACTTCCATGTCAAGTTTCTTCTTCTTAAACAAAATCTTATACCTGACACAGAGCTACCAATGTTAACAAATTTTTTTGTATTTTTAGAAACTTCTTCTGTTATACCCTGTGAAGAACTACTCGATATTCCAAGAATCACCCGAGAACACTTATACCCCATTATTTCTGATGAGAACCTCTCGTTGTTGACACGCAAAATCTTATCTTACGCTCGATCAATATTGATCCAACATCATCGTACTATTTCAGGCACTGCCCACAGGCACTTGTTACCTTTGACTGTGGAGGTTATAGTTCCTAATGAAGGAGAAGATTTAGGGATGGACAGGGTCAATCAGCAGTCCATGCAACAAGTTTCAATGGTTTCAGCGACGGAGAAAGCTGTAGAGCCACTCGAGAAAGTGAAAGTGGTCTATGATGGACTTGAGGAAAAACAGTGTAGTATTTGTCTAGAAGATTTTGAAGATGGTGAGGATGTTTCAGCAACGCAGTGCGACCATTTTTATCACAAGAATTGTATACTGCAGTGGCTAAAAGAAAGTCATACGTGCCCATTATGCCGCTGCCAAATGGTAGAATGA 657 0.4033 MAFLPIDFHIHSDDHILALDEEDGDHFHVKFLLLKQNLIPDTELPMLTNFFVFLETSSVIPCEELLDIPRITREHLYPIISDENLSLLTRKILSYARSILIQHHRTISGTAHRHLLPLTVEVIVPNEGEDLGMDRVNQQSMQQVSMVSATEKAVEPLEKVKVVYDGLEEKQCSICLEDFEDGEDVSATQCDHFYHKNCILQWLKESHTCPLCRCQMVE 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2384 218 Pfam Ring finger domain 171 213 IPR001841 -
Glsi08g2384 218 SMART ring_2 172 212 IPR001841 -
Glsi08g2384 218 ProSiteProfiles Zinc finger RING-type profile. 172 213 IPR001841 -
Glsi08g2384 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 217 IPR013083 -
Glsi08g2384 218 CDD RING-H2_PA-TM-RING 171 213 - -
Glsi08g2384 218 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 117 214 - -
Glsi08g2384 218 SMART ringv_2 171 213 IPR011016 GO:0008270
Glsi08g2384 218 SUPERFAMILY RING/U-box 164 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2384 Glsi-ChrGlsi08 20625887 20626543 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2384 142 214 C3H Transcription Factor Family AT5G41430 37.838 2.26e-13 63.9