Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2323 ATGGGCAACTGTTGCTCTCGGGGCACCGACACCGATGCCCCGGAGGAAACCGCCGCCGAGGCCACCGCTACCAAGGGAGGAGAATCCACCAGTCACCACAACGGCAGCGCCCATGCTGCTGCCGCCCCGACCGCCGAACCCGCAGCCAAGCCTCACCCCTCCCCACCTCCTACCAAGCAACCGAAAGTCGGCCCCGTGGGCCCCGTCCTAGGGCGGCCCATGGAGGACGTGAAAGCCACTTACAGCATAGGGAAGGAGCTAGGAAGAGGCCAATTTGGGGTGACCCATTTGTGCACCCACAAGGCCACAGGGGAGCAATTTGCCTGCAAGACCATAGCTAAAAGGAAGCTAGCGAACAAGGAGGATATAGAGGATGTAAGAAGGGAGGTTCAGATAATGCACCATTTGGCAGGACAAGCTAACATTGTGGAGCTTAAAGGTGCCTATGAGGACAAGTCTTCGGTTCATCTTGTGATGGAGCTGTGTGCTGGGGGAGAGCTTTTTGATAGGATCATAGCCAAGGGTCATTATACAGAGCGAGCTGCTGCGGCGTTGTTGAGGACTATAGTTCAGATTGTGCATACTTGCCATTCCATGGGGGTGATTCATAGAGATCTCAAGCCTGAGAATTTTCTGCTCTTGAATAAGAACGAGAACTCTCCTCTCAAGGCCACGGATTTCGGTTTATCCGTTTTTTACAAACAAGGAGAGACATTTAAAGATATTGTTGGTAGTGCATATTACATTGCTCCGGAGGTCTTGAAAAGGAAATATGGACCAGAAGTTGATATATGGAGTATTGGTGTCATGCTGTACATTCTTCTATCTGGTGTTCCTCCATTTTGGGCAGAATCTGAAAATGGCATATTCAATGCCATCTTACGAGGCCACGTGGACTTCTCATCCGATCCATGGCCGTCCATTTCACAATCGGCAAAAGATCTTGTGAAAAAAATGTTGAATTCAGATCCCAAGCAGAGGCTCACAGCATACCAAGTATTGAATCATCCATGGATTAAGGAGGATGGAGAAGCACCTGATAAACCTCTTGACAATGCTGTGCTGAATAGGCTCAAGCAGTTCAGAGCGATGAACCAATTCAAGAAAGCTGCTCTAAGGGTCATTGCTGGGTGCCTATCGGAGGAAGAAATTATGGGATTGAAGGAAATGTTCAAAGGGATGGACACTGACAATAGTGGAACTATAACGGTTGAAGAGCTTAAGCAAGGGCTTGCAAAACAAGGGACAAAGCTCACGGAACAAGAAGTTAGGCAATTGATGGATGCTGCTGATGCTGATGGCAATGGGACCATAGATTACGACGAGTTCATCGCAGCAACAATGCATTTGAACCGAATGAACAAAGAAGAACATGTTTATACTGCCTTCCAATACTTTGATAAAGATAACAGCGGGTTCATTACCATAGAAGAACTGGAGCAAGCTCTCAATGAATTTAACATGCATGATGGCAGGGACATCAAGGAAATCATTTCGGAAATTGATACAGATCATGATGGTAGGATTGACTACGATGAGTTTGCGGCAATGATGAGAAAAGGGAACCCAGAAGCTATGACCTGCAAGAAGAGGCGTGATTCGTTTGTTTGA 1611 0.4761 MGNCCSRGTDTDAPEETAAEATATKGGESTSHHNGSAHAAAAPTAEPAAKPHPSPPPTKQPKVGPVGPVLGRPMEDVKATYSIGKELGRGQFGVTHLCTHKATGEQFACKTIAKRKLANKEDIEDVRREVQIMHHLAGQANIVELKGAYEDKSSVHLVMELCAGGELFDRIIAKGHYTERAAAALLRTIVQIVHTCHSMGVIHRDLKPENFLLLNKNENSPLKATDFGLSVFYKQGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSIGVMLYILLSGVPPFWAESENGIFNAILRGHVDFSSDPWPSISQSAKDLVKKMLNSDPKQRLTAYQVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKAALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITVEELKQGLAKQGTKLTEQEVRQLMDAADADGNGTIDYDEFIAATMHLNRMNKEEHVYTAFQYFDKDNSGFITIEELEQALNEFNMHDGRDIKEIISEIDTDHDGRIDYDEFAAMMRKGNPEAMTCKKRRDSFV 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2323 536 ProSiteProfiles Protein kinase domain profile. 81 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2323 536 SMART serkin_6 81 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2323 536 SUPERFAMILY EF-hand 379 519 IPR011992 -
Glsi08g2323 536 SUPERFAMILY Protein kinase-like (PK-like) 65 366 IPR011009 -
Glsi08g2323 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 76 514 - -
Glsi08g2323 536 MobiDBLite consensus disorder prediction 48 63 - -
Glsi08g2323 536 FunFam calcium-dependent protein kinase 1 167 346 - -
Glsi08g2323 536 FunFam Calcium-dependent protein kinase 1 83 166 - -
Glsi08g2323 536 ProSitePatterns Protein kinases ATP-binding region signature. 87 114 IPR017441 GO:0005524
Glsi08g2323 536 SMART efh_1 458 486 IPR002048 GO:0005509
Glsi08g2323 536 SMART efh_1 493 521 IPR002048 GO:0005509
Glsi08g2323 536 SMART efh_1 422 450 IPR002048 GO:0005509
Glsi08g2323 536 SMART efh_1 386 414 IPR002048 GO:0005509
Glsi08g2323 536 MobiDBLite consensus disorder prediction 1 71 - -
Glsi08g2323 536 ProSitePatterns EF-hand calcium-binding domain. 467 479 IPR018247 -
Glsi08g2323 536 ProSiteProfiles EF-hand calcium-binding domain profile. 454 489 IPR002048 GO:0005509
Glsi08g2323 536 FunFam Calcium-dependent protein kinase 1 347 522 - -
Glsi08g2323 536 Pfam Protein kinase domain 81 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2323 536 Gene3D - 347 522 - -
Glsi08g2323 536 ProSiteProfiles EF-hand calcium-binding domain profile. 493 524 IPR002048 GO:0005509
Glsi08g2323 536 ProSiteProfiles EF-hand calcium-binding domain profile. 418 453 IPR002048 GO:0005509
Glsi08g2323 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Glsi08g2323 536 Gene3D Phosphorylase Kinase; domain 1 83 166 - -
Glsi08g2323 536 ProSitePatterns EF-hand calcium-binding domain. 431 443 IPR018247 -
Glsi08g2323 536 Pfam EF-hand domain pair 457 519 IPR002048 GO:0005509
Glsi08g2323 536 Pfam EF-hand domain pair 387 447 IPR002048 GO:0005509
Glsi08g2323 536 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509
Glsi08g2323 536 ProSitePatterns EF-hand calcium-binding domain. 502 514 IPR018247 -
Glsi08g2323 536 MobiDBLite consensus disorder prediction 23 37 - -
Glsi08g2323 536 Gene3D Transferase(Phosphotransferase) domain 1 167 346 - -
Glsi08g2323 536 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Glsi08g2323 536 CDD STKc_CAMK 81 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2323 Glsi-ChrGlsi08 18845548 18852093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2323 1 535 EF-hand Containing Proteins AT5G12180 81.343 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi08g2323 Pkinase 1.1e-76 CL0016