Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2291 ATGAACAACTCCTTCAAAGGTTTTCTGAGTTCTGGATATGATCTTACATTTTCCATTGGAGCTGGAAATTTGACGAAACCTAACTTAAGACTTGCAATTCCATTGGTGTTGATTCATCAAGTTGGTTATACAACCTCATTCCAGATTCCCAATTCCCCTTCAAAGATTTTGGAAGCAAAATCTTCTCTACCCAAATTCTCAACCTATTTGCCTTTGCTCAGTGATTGTTGTGCCTTCTGGTATCTCATCGCTCTCTTCTGTCTTCCATTTCTGGTTGCTGTCTGGTTTGATGCCTTCTGGTTGCTTTCAAATGTTCTAATTTGTTTGTTTTGGCTGGGGCCTTTCGTCCTCTACCGAACAACCGGCCGTTTTACTGTTTCTTCTTCCTATTGATCTGTCACGATGACTCCACTCGAAAAGATCGAAGGCGGACAGCTCCTGGACAACGCTATTCAGGATCTATCGCTGAAAGATCAGAGTGATGTACGAAGTGAAGCAGAGACTCTTGGGGTGGGATTAGGCCATGGGGGAGTCTGTGCTATTTGCTTGGATAGCATAGTCCTCCAAGAAACGGCCCTGGTAAAAGGGTGTGAACACACTTACTGTGTGACATGCATCCTTCGCTGGGCCACATACAGTCCAAAAGTCACCTGTCCTCAGTGTAAACATCCATTTGAGTTCCTCAATGTCCATCGCTCACTTGATGGCAGCATTCATGACTACATGTTCGAGGAAAGTGTCTGCCTACTTCTTCGGGCATCATGGTTTAAACCTTTACCTGTGGAAGATCACGCTGAACATCAAGATATTTATGATGACATTGAGGACTACTACGAATATGAGGATGAGGGGGATGATCTAGATGATGTTTACTATGGTAGCTCGTCAAGTATTCGCATTGGTAACAGGAGATGGGGAGATAATGGTTATGTCAGGGCCGGGCGTCAACAAGCAAGGCCTTTGCATCAACCTAACTCGCTGGATTCAGGAGCAAGTTCATCTTCCCGGCAGCCAAAGAACAAAGAGGTTGCAAATTGTGGTACTACAGCAGGGCGGCGAGCTAAAAGAGCCCTCAAACGGGAAGCTGCTGACAAGGCTGCTGCAACCAAGCATCAGCAGCATTTGGTAAGGCTGGGCAGGAAATGA 1146 0.4564 MNNSFKGFLSSGYDLTFSIGAGNLTKPNLRLAIPLVLIHQVGYTTSFQIPNSPSKILEAKSSLPKFSTYLPLLSDCCAFWYLIALFCLPFLVAVWFDAFWLLSNVLICLFWLGPFVLYRTTGRFTVSSSYXSVTMTPLEKIEGGQLLDNAIQDLSLKDQSDVRSEAETLGVGLGHGGVCAICLDSIVLQETALVKGCEHTYCVTCILRWATYSPKVTCPQCKHPFEFLNVHRSLDGSIHDYMFEESVCLLLRASWFKPLPVEDHAEHQDIYDDIEDYYEYEDEGDDLDDVYYGSSSSIRIGNRRWGDNGYVRAGRQQARPLHQPNSLDSGASSSSRQPKNKEVANCGTTAGRRAKRALKREAADKAAATKHQQHLVRLGRK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2291 381 ProSitePatterns Zinc finger RING-type signature. 197 206 IPR017907 -
Glsi08g2291 381 MobiDBLite consensus disorder prediction 354 371 - -
Glsi08g2291 381 MobiDBLite consensus disorder prediction 319 344 - -
Glsi08g2291 381 ProSiteProfiles Zinc finger RING-type profile. 179 222 IPR001841 -
Glsi08g2291 381 MobiDBLite consensus disorder prediction 311 381 - -
Glsi08g2291 381 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 140 381 - -
Glsi08g2291 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 242 IPR013083 -
Glsi08g2291 381 SMART ring_2 179 221 IPR001841 -
Glsi08g2291 381 Pfam Ring finger domain 179 222 IPR001841 -
Glsi08g2291 381 SUPERFAMILY RING/U-box 178 228 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2291 135 381 C3H Transcription Factor Family AT5G19430 56.250 2.32e-83 253