Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2290 ATGGTTAGGGAGGAACCCACCTTGAGCTATCAACTTCTTTTGATTGCCACTGAGATATCATTATCACCTTTAGTTGTGGCTACTACAAGGAGGTTACCTTCAGACTCTGGAGGTGCTTTTGCAGAGTGGGCAGCTACTTCTTCCACCGGCCGCGCTGCCCCGGACGATCTCTCCCTCAGCTTCAATGCAGGACCCACCGCCGCGGCAGGTGGAGCTACCTCCGGACCCACCTCCGGAATGTGGTCCGGTGGCACTAGGTCAAACAATTATGGCCTCCCACCGGAGATGGGCATGTTGGGTCTGCGAGACCTTTTTGTCATGTCCTCCGATCCTCATTCCATCAACTGCTCGAACCCCACTACCGCACTTGGCGTCGGTGTTATCCCTCTACTTACGGCCGCTCCGTGTCTTGGCGGCGGCGTCGACAACGAGAACATGCTGAGTAATCGAAACCGAGGTGGGGGAATCCAATTATGGCAGGAATCTGAGGAACACGGAAATTATTTGAAGAAGCAAGGATTGCTTGAACATAACAATAGTTCTGAGAATTTAATCCGTAACGGTGATGGGATCAGTGGTTCAGCTGGTGGAGTAACAACGTGTCAAGACTGTGGAAACCAAGCAAAGAAAGATTGTAGTCATGGAAGGTGTAGGACTTGTTGCAAAAGTAGAAATTATGATTGCCCTACTCACGTTAAGAGCACTTGGGTGCCGGAATCTCGGCGGAGGGAACGCCGGCTTGTAGCGGTGTCAGCAGCAGCACCGCCTGGGTCTACTTCTGGTGCCAAGAAACCTAGACTTGTTCCATCACAACCCACAAACTCTCATACTTCCACTTCCAATACCACGCCTCCTAGGAGCTTTGACACTAGCTCTAGCCACCAAGATGCGAGTTTTAAAGAGCCATTGCCGGGACAAGTACGAGCGCCGGCGGTGTTCAAGTGTGTTAGAGTGACGGCGATGGACGATGGGCAAGACGAGTTCGCATATCAGGCGACTGTGAAGATTGGTGGGCATGTGTTTAAAGGCTTTTTATACGATCAAGGCGTTGAAAGTAGAGAGGCATATCCTAATCTATCTGAGCTTCATTTGGGGGGTGGTGGTGGTGGTGGTGGAGGGAGAAATGGGGCTTCATCTTCTTCCCCAATGCTGGATCCTCCTGATGTATATGAAGCTTCAGGTCATGGGGGCTTACCTGGAGGTTCAACTTCAACCTATGGTAATCCAATAAATTGA 1236 0.5097 MVREEPTLSYQLLLIATEISLSPLVVATTRRLPSDSGGAFAEWAATSSTGRAAPDDLSLSFNAGPTAAAGGATSGPTSGMWSGGTRSNNYGLPPEMGMLGLRDLFVMSSDPHSINCSNPTTALGVGVIPLLTAAPCLGGGVDNENMLSNRNRGGGIQLWQESEEHGNYLKKQGLLEHNNSSENLIRNGDGISGSAGGVTTCQDCGNQAKKDCSHGRCRTCCKSRNYDCPTHVKSTWVPESRRRERRLVAVSAAAPPGSTSGAKKPRLVPSQPTNSHTSTSNTTPPRSFDTSSSHQDASFKEPLPGQVRAPAVFKCVRVTAMDDGQDEFAYQATVKIGGHVFKGFLYDQGVESREAYPNLSELHLGGGGGGGGGRNGASSSSPMLDPPDVYEASGHGGLPGGSTSTYGNPIN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2290 411 Pfam Domain of unknown function (DUF702) 199 351 - -
Glsi08g2290 411 MobiDBLite consensus disorder prediction 264 299 - -
Glsi08g2290 411 NCBIfam LRP1 C-terminal domain 303 350 IPR006511 -
Glsi08g2290 411 MobiDBLite consensus disorder prediction 251 304 - -
Glsi08g2290 411 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 145 392 IPR007818 GO:0003700|GO:0006355
Glsi08g2290 411 NCBIfam putative zinc finger domain, LRP1 type 200 242 IPR006510 -
Glsi08g2290 411 MobiDBLite consensus disorder prediction 361 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2290 Glsi-ChrGlsi08 18227466 18229592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2290 26 389 C2H2 Transcription Factor Family AT5G12330 49.118 2.91e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Glsi08g2290 DUF702 3e-58 No_clan