Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2288 ATGGGAGAATCAAGCGAATTACAATCAGAAGAGAATAAAGCTTCTTTGGAGAAAAATAAGAAGAGAAAACTCAAAACACCTGCCCAGGTTTTTGCCTTGGAGAAATTTTATAATGAGCACAAATATCCCACAGAGGAAATGAAATTGGAACTTGCTGAGGAGATAGGGTTGACAGAAAAGCAAGTATCTGGTTGGTTTTGCCACCGGCGGCTAAAAGATAAAAGGATGTTGAAAGAGGAAGTTTGTGCTAATGGGCGACAAGATCTTTCAAGTGGTGTTATCCAGGATCGTGGCAGTGGACTAGGGCAAGATTCATGTGGAAGCACTAAACATGGTGATTATAGGCATCTTGACCCCAAAGAGGTTGAGAGTTGTGGCCTTTATGGTCATGATGGTTCAGTTGCACATATGACGTATGAACGTAGGAATCATTATACAGAAAATGTTGGTGGAATGGATGACACATCATCTGAGAGTAGCTCATCATTGCAAGATAAGTTGTTTCCTCAAGGTCAGGATCCATATGACATGGAGCCTTCCAGATATCTAACACCTAATGGAGCTCTGCCACCTTTAAATCCCACAAGATATAAACCATCAGGTTACTTGAAAGTGAAGGGAGAGACAGAAAACCCTGCTGTAACTGCTGTTAAGAAGCAACTAGGAAGGCATTATCGGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCCACTTCCTCCAGGGGCATTTGAGTGTCAAATTGCAGATCCAGTTCATGAACTGTACTATATCGCAAATCCTGCTCTTCGCAATTCTTCAGAAATTTCTGCTGTGAAAAGGCAACCCAGTCTTAGTTCTAGATATGATTCGTATAATACCAAATTTAGTTCCCAAGATTCACATCTGGAAGGAGCAGAGCACTCTGATTTCCAGGATAAGAAATCTCGCCAGCATATAAAGGAAAGGCTGACTATGTACAGTAGTAACAATCCTTGGCCTAGCAGAAACTCTTCCCTGGCTTTGTATGAACATTCTACTGCAGAAGCATCTGCTTATAATAGCAATAAGAATCGTAGAATTGGCACTAAGCATGGTGTTGAAGGGATGAAATTGGATTCTGCTTCTAACCATAGTGATCACTATGAAGGGAACCTTGAAGTAGACCTGACAGACTCATTGCTGCATGGCTATGATAATGTCAATTTGATGAATGTCCAAAAGAGTGAATATGTAAAATCTAGGCCTTCAAATTCAATCAGTAATCCTTGTGTTTCTGTTGATACCGAAGATAGAGGGCTATCTACTAAGATGGCAAAGGAAAAAAAATATAGTGGAGACAGAAAGGCAAGAAAACAATATGATAATTCAGCTGGAGTAAGGACGCTTTCAAATGAAATCACAGTTGCAAAACGTGTTTTTGATCTACCTCTACAACATGATGTTAAACAAGCACCTGTTGCTGAGGTGCAATCGCAGAGAAGTCACAGATCCGCCATGGAAATGTCGTCTAGCTTTAGCGAGGATGAAACTGCTGATATCAGCTCCTCTGTGGATTAA 1539 0.4074 MGESSELQSEENKASLEKNKKRKLKTPAQVFALEKFYNEHKYPTEEMKLELAEEIGLTEKQVSGWFCHRRLKDKRMLKEEVCANGRQDLSSGVIQDRGSGLGQDSCGSTKHGDYRHLDPKEVESCGLYGHDGSVAHMTYERRNHYTENVGGMDDTSSESSSSLQDKLFPQGQDPYDMEPSRYLTPNGALPPLNPTRYKPSGYLKVKGETENPAVTAVKKQLGRHYREDGPLLGVEFDPLPPGAFECQIADPVHELYYIANPALRNSSEISAVKRQPSLSSRYDSYNTKFSSQDSHLEGAEHSDFQDKKSRQHIKERLTMYSSNNPWPSRNSSLALYEHSTAEASAYNSNKNRRIGTKHGVEGMKLDSASNHSDHYEGNLEVDLTDSLLHGYDNVNLMNVQKSEYVKSRPSNSISNPCVSVDTEDRGLSTKMAKEKKYSGDRKARKQYDNSAGVRTLSNEITVAKRVFDLPLQHDVKQAPVAEVQSQRSHRSAMEMSSSFSEDETADISSSVD 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2288 512 CDD homeodomain 20 76 IPR001356 GO:0003677
Glsi08g2288 512 Gene3D - 8 90 - -
Glsi08g2288 512 MobiDBLite consensus disorder prediction 407 426 - -
Glsi08g2288 512 MobiDBLite consensus disorder prediction 294 308 - -
Glsi08g2288 512 MobiDBLite consensus disorder prediction 274 293 - -
Glsi08g2288 512 SUPERFAMILY Homeodomain-like 18 85 IPR009057 -
Glsi08g2288 512 MobiDBLite consensus disorder prediction 274 308 - -
Glsi08g2288 512 MobiDBLite consensus disorder prediction 479 512 - -
Glsi08g2288 512 MobiDBLite consensus disorder prediction 1 21 - -
Glsi08g2288 512 MobiDBLite consensus disorder prediction 407 422 - -
Glsi08g2288 512 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Glsi08g2288 512 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Glsi08g2288 512 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 512 - -
Glsi08g2288 512 SMART HOX_1 18 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2288 Glsi-ChrGlsi08 18166449 18173869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2288 3 512 Homeobox Transcription Factor Family AT4G03250 42.026 9.01e-88 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Glsi08g2288 Homeodomain 1.8e-16 CL0123