Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2287 ATGGTGGATTTGAGCGCTAGTGATGATTTTGAGCTGTTGGAGTGTGGCAATTTGGGGTTTAGTAGGGGCTGGTGGCAATTCTTGGGTCAATTGATGAATGGAAGGGTTCGGTCACTGGATTTGATTTGCAAAGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTAATACCAAGTAGTCATCACCGGAAGTTGAGAACAGAGTCAAGAAGTGATGGTTTTCCATCTGAAGCTAATAGTCCCAGAACGTACACTAGAAGGAGTTCCCCCTTAAATTCTCCATTTGGTAGTAATGAAAGCTTGCAAAAGGACAGTGGGGATCACCTTCCCCTTCATAGCCCATTTGAGAGTCCCCCTAAGAATGGTTTGGACAAAGCATTCTCTGATGTGATGTTGTATGCTGTTCCTCCAAAGGGTTTCTTCCCTCCAGATTCGGCTAGTGGTTCAGTCCACTCTGTGTTGTCAGGAGGATCAGATAGTGTACATGGTCACATGAAGGCAATGGGCATGGATGGTTTTAGATTATCTAGTGCTGTTAGCTCATCCAGCCAGGGTTCTGGCCATGATGATGGTGATGCCCTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTCTGGGTGGTGGGACTCACCATACTGGTAGTTGTCTTGGTGTAAAAATGGATTCTCTATTGCCCAAAGCCTTGGAATCTGCTGTAGTACTTGATGTACAAAACATTGCTTGCGGTGGACGACATGCTGCCTTAGTGACCAAGCAAGGAGAAATTTTCTCCTGGGGGGAGGAATCAGGAGGCAGGCTTGGGCATGGTGTTGACTCTAATGTTCTCCATCCAAAGCTTATAGAGACTCTAAGTAATACCAATATTGAACTTGTCGCTTGTGGGGAGTATCATACATGTGCTGTGACGCTTTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTGGGGCATGGAAATCAAGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGGCCCTTGGAGGGCATACATGTTTCATCTATCTCTTGTGGTCCATGGCACACTGCCGTTGTTACCTCAGCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGCATTCTAGGTCATGGGGACCGGAAAAATGTTTCAATACCAAGGGAAGTAGAGTCCCTTAAGGGTCTTCGTACTGTGCGGGCTGCTTGTGGCATTTGGCATTCTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTATTCAGGGAAGCTGTTTACTTGGGGAGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAAGCAAAACTTGTTCCTACTTGTGTTGCAGCTCTTGTTGAGCCCAACTTTTGTCAAGTTGCTTGTGGACACAGTCTGACTGTTGCACTTGCTACCTCAGGCGATATCTATACTATGGGTAGTCCTGTCTATGGCCAACTAGGAAATCCCCAAGCCAATGGGAAGTTACCAACACGTGTTGAAGGAAAGCTCTCAAAGAATTTTGTGGAAGAGATAGCTTGTGGTGCATACCATGTTGCAGTTTTAACTTCAATTACTGAAGTTTACACATGGGGCAAGGGTGCAAATGGTCGTTTAGGCCATGGGGACACAGAGGATAGAAATACTCCAACATTAGTGGAAGCTCTAAAAGACAAACAAGTCAAAAGTATTGCTTGTGGTACTAATTTCACTGCTGCTATCTGTCTTCATAAGTGGGTCTCTGGTGTTGATCAGTCCATGTGTTCTGGTTGCCGTCTGCCTTTTAATTTCAAAAGAAAACGTCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGTAGCTGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAATCCCAACAAACCTTACCGTGTCTGTGATAATTGTTATAATAAAATAAGAAAAACTATTGAAAATGATTCTTCATCCCATTCCTCTGTGAGCAGAAGAGGAAGTATCAATCAGGGGCCACTTGAGCTTATTGATAAGGATGATAAGTTCAATTCCAGATCTCGTAATCAGCTTGCTAGGTTTTCTTCAATGGAATCTTTGAAGCAAGCGGAAAGCAGGTCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGCAGCCGTGTCTCACCCATTCCAAATGGAGGTTCCCAGTGGGGATCATTGAATATTTCTAAGTCTTTTAATCCTGTTTTTGGATCATCAAAGAAGTTTTTCTCAGCTTCTGTTCCTGGATCTAGAATTGTCTCAAGAGCAACATCCCCAATATCTAGACATCCCAGTCCACCACGATCAACTACTCCAACCCCAACACTGGGAGGACTTACCTCCCCAAAGATAGTTGTGGATGATGCTAAGAGGACTAATGATAGCCTTAATCAGGAGATTATTAAATTAAGAGCACAGGTGGAAACTCTGACTCGCAAAGCTCAACTTCAAGAAGTTGAGTTGGAAAGAGCAACTAAACAACTGAAGGAAGCAATAAAAATTGCTGGTGAAGAAACTGCTAAGTGCAAAGCGGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGATGTGGCTACGGGAGCATCTAAGAATGTCAAATCACCATCTCTTGCATCCTTTGGATCCAATCCTGGTTCCAATGAAGTCTGTAATGCTTCTATTGATGGATTAAACATTCAAGCTACTAGCCTAGAAGCGGATTTAGCAGGATTAAACAACCAGTCACTTTCAAATGGATTGAGCACCATCAGTTACCGTAGTGCAGGTCACAACAAACAGAGCCAGTTAGATGCAACGAATAGAAATGGGGGCAGAACAAAGGAAAGTGAGTCTCGTAATGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTATTTATTACACTCACCTCCCTCCCAGGAGGTGTAATTGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTCAGTGAGAAACAAGCAGAACAATGGTGGGCTGAGAATCGAGCGAGAGTATATGAGCGGTACAATGTGCGCATGGCTGATAAGTCAACTGTTGGTGTTGGGAGTGAGGACCTGGCTCATTGA 3105 0.4393 MVDLSASDDFELLECGNLGFSRGWWQFLGQLMNGRVRSLDLICKDKDEAEVWFSGLKALIPSSHHRKLRTESRSDGFPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLPLHSPFESPPKNGLDKAFSDVMLYAVPPKGFFPPDSASGSVHSVLSGGSDSVHGHMKAMGMDGFRLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTHHTGSCLGVKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSNVLHPKLIETLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGILGHGDRKNVSIPREVESLKGLRTVRAACGIWHSAAVVEVMVGNSSSSNCYSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTVALATSGDIYTMGSPVYGQLGNPQANGKLPTRVEGKLSKNFVEEIACGAYHVAVLTSITEVYTWGKGANGRLGHGDTEDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSCKKSLKASMAPNPNKPYRVCDNCYNKIRKTIENDSSSHSSVSRRGSINQGPLELIDKDDKFNSRSRNQLARFSSMESLKQAESRSSKKNKKLEFNSSRVSPIPNGGSQWGSLNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRHPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLNQEIIKLRAQVETLTRKAQLQEVELERATKQLKEAIKIAGEETAKCKAAKEVIKSLTAQLKDVATGASKNVKSPSLASFGSNPGSNEVCNASIDGLNIQATSLEADLAGLNNQSLSNGLSTISYRSAGHNKQSQLDATNRNGGRTKESESRNETEWVEQDEPGVFITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYERYNVRMADKSTVGVGSEDLAH 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2287 1034 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 591 653 IPR017455 -
Glsi08g2287 1034 MobiDBLite consensus disorder prediction 766 793 - -
Glsi08g2287 1034 FunFam Putative E3 ubiquitin-protein ligase HERC1 593 661 - -
Glsi08g2287 1034 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 246 256 IPR000408 -
Glsi08g2287 1034 PRINTS Chromosome condensation regulator RCC1 signature 312 328 IPR000408 -
Glsi08g2287 1034 PRINTS Chromosome condensation regulator RCC1 signature 353 369 IPR000408 -
Glsi08g2287 1034 PRINTS Chromosome condensation regulator RCC1 signature 369 383 IPR000408 -
Glsi08g2287 1034 PRINTS Chromosome condensation regulator RCC1 signature 472 490 IPR000408 -
Glsi08g2287 1034 PRINTS Chromosome condensation regulator RCC1 signature 243 256 IPR000408 -
Glsi08g2287 1034 PRINTS Chromosome condensation regulator RCC1 signature 262 278 IPR000408 -
Glsi08g2287 1034 PRINTS Chromosome condensation regulator RCC1 signature 530 551 IPR000408 -
Glsi08g2287 1034 ProSiteProfiles BRX domain profile. 961 1016 IPR013591 -
Glsi08g2287 1034 Pfam Unstructured region between BRX_N and BRX domain 885 954 - -
Glsi08g2287 1034 Coils Coil 797 845 - -
Glsi08g2287 1034 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 198 259 IPR000408 -
Glsi08g2287 1034 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 431 482 IPR000408 -
Glsi08g2287 1034 SUPERFAMILY RCC1/BLIP-II 197 588 IPR009091 -
Glsi08g2287 1034 Coils Coil 900 920 - -
Glsi08g2287 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 665 IPR013083 -
Glsi08g2287 1034 MobiDBLite consensus disorder prediction 64 123 - -
Glsi08g2287 1034 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 260 311 IPR000408 -
Glsi08g2287 1034 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 353 363 IPR000408 -
Glsi08g2287 1034 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 483 534 IPR000408 -
Glsi08g2287 1034 Pfam FYVE zinc finger 587 653 IPR000306 GO:0046872
Glsi08g2287 1034 SUPERFAMILY FYVE/PHD zinc finger 587 657 IPR011011 -
Glsi08g2287 1034 Gene3D - 30 69 IPR011993 -
Glsi08g2287 1034 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 535 586 IPR000408 -
Glsi08g2287 1034 MobiDBLite consensus disorder prediction 75 107 - -
Glsi08g2287 1034 MobiDBLite consensus disorder prediction 934 948 - -
Glsi08g2287 1034 Pfam Transcription factor regulating root and shoot growth via Pin3 960 1015 IPR013591 -
Glsi08g2287 1034 Gene3D - 322 501 IPR009091 -
Glsi08g2287 1034 Gene3D - 502 592 IPR009091 -
Glsi08g2287 1034 Gene3D - 150 321 IPR009091 -
Glsi08g2287 1034 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 418 IPR000408 -
Glsi08g2287 1034 MobiDBLite consensus disorder prediction 697 735 - -
Glsi08g2287 1034 MobiDBLite consensus disorder prediction 659 685 - -
Glsi08g2287 1034 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 312 366 IPR000408 -
Glsi08g2287 1034 MobiDBLite consensus disorder prediction 720 735 - -
Glsi08g2287 1034 SMART fyve_4 585 654 IPR000306 GO:0046872
Glsi08g2287 1034 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 27 868 - -
Glsi08g2287 1034 FunFam PH, RCC1 and FYVE domains-containing protein 1 421 592 - -
Glsi08g2287 1034 MobiDBLite consensus disorder prediction 934 962 - -
Glsi08g2287 1034 Pfam Regulator of chromosome condensation (RCC1) repeat 260 308 IPR000408 -
Glsi08g2287 1034 Pfam Regulator of chromosome condensation (RCC1) repeat 482 531 IPR000408 -
Glsi08g2287 1034 Pfam Regulator of chromosome condensation (RCC1) repeat 311 363 IPR000408 -
Glsi08g2287 1034 Pfam Regulator of chromosome condensation (RCC1) repeat 536 583 IPR000408 -
Glsi08g2287 1034 Pfam Regulator of chromosome condensation (RCC1) repeat 430 479 IPR000408 -
Glsi08g2287 1034 Pfam Regulator of chromosome condensation (RCC1) repeat 367 415 IPR000408 -
Glsi08g2287 1034 Pfam Transcription factor BRX N-terminal domain 848 872 IPR027988 -
Glsi08g2287 1034 FunFam PH, RCC1 and FYVE domains-containing protein 1 171 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2287 Glsi-ChrGlsi08 18149839 18159787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2287 857 1025 Major Intrinsic Protein MIP AT1G31880 32.402 3.71e-14 73.6