Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2279 ATGGTGGGAAGGTCTGAAAGTGATTCCACTAAGCTTCTTGCATCTTGGGGTCTTCTCTGCATATTCTTCTGTGTCTGTGTGAAGTCCTCTTCATTCCAAGTTTCTGCTTCTTTTGCCTCCGTTGCAGCAGAAGATCATAACGAAGCAAATGCTCTGTTGAAGTGGAAAGCAAGCCTTGTCAAACAAAGCCAAGACACCTTGTCCTCCTGGAATGGCACTGGTAGTCCTTGCAAGAACTGGAAAGGGATTTCATGTGATGAATCCATGTCTGTCTCCATGATAAATCTTACTAATCTTGGGCTACAAGGTAGACTTCACAATCTCAACTTCGCATCCTTCCCTAACCTCCACATTCTAGATATAAGTCACAACATGTTTGACGGAAATATTCCTCCCCAAATTGGTAACTTGTCCAATATCTTCACTTTGAAATTGTTCAATAATTTCTTACGTGGTCCCATCCCTAGAGAAATAGGAGCTTTGAGCACTCTAAATTTGCTTGATATTGGCACATGTAATCTCACTGAGCCAATTCCCCAAGAAATTGGGAACTTGAGGAATCTGACATATCTAATACTTAAGACTAATCACCTTTCTGGTTCCATTCCAAAAGAAATCGGAATGTTGAATAGTCTTTTGCAACTTGATTTGTCAGAAAATCCACTGTTATCTGGTAGAATCCCTTCTTCAATTGGAAACTTGAGCAAGTTACAAGGACTTTACCTCTATAACATGAGTCTCTTTGGTCCCATTCCTAATGAAATTAGGAATCTATATTCTCTCACTGATCTTCAATTCATAAATAATAACCTCCATGGGCCAATCCCACCCTTTATAGGGAACTTCACAAATCTCACCACGTTGGAGTTGGGCAACAACAAACTTTTTGGATCAATTCCAGTATCAATTGGGAACTTGGTCAATTTAGGGATCCTCGGCTTAGGAAATAACAATCTTTCCGGACATGTTCCTTCCACCATAGGAAATTTGACAAAACTCAAAGAGTTAGTGTTGTTTACAAACAACCTTACTGGTCTCATTCCACCAGAGATAAGTAATCTCACCAATTTGTTTAATTTACAATTAGGTGAGAATGATTTCATCGGCCATTTGCCACAGGTTTGCCTTGGTCAGTCTTTAGAAATATTTGGTGTTGACACGAACCATTTCAGTGGTCCAATTCCAAGAAGCTTGAAGGATTGCTCCAGCCTTTATAGACTCAGGCTTGATAATAACCAATTAGTTGATAATATAGCAGATGCTTTTGGTGTACATTCAAATTTGAACTACATCGACCTTAGTGGAAACAAATTGTATGGCCACCTTTCTTCCAAGTGGGGCAAGTGTGGTAATCTCACAAGCCTCAAGATTGCCAATAATAATCTTTCTGGTGGTATACCACCCCAACTTGGGGAAGCAACCAAGCTTGGTGAACTTAACCTTTCATCAAATCATCTGAGAGGAGAAATTCCAAAAGAATTGGGAAAGTTGACCTCATTGATTAAACTCTCTCTGAGCCACAATCAATTTTCAGGTAACATTCCGATAGAAATAGGATCGCTGAGTCGACTTGAACAGTTGGAGTTGGAAGCAAACAATTTAAGTGGCTCAATTATAAAAGATCTAGGCCAATTTTCCAATTTATGGCTCTTGAATTTGAGTAGCAACAAATTTGAAGAAAGCATTCCCTCTGAGTTTGGTCAATTACGTGCTCTTCGAAACCTTGATCTCAGTAGGAATTTATTGACAGGAACAATACCAACAACACTTGGAGATTTGGAAAGCTTGATGACATTAAACCTCTCACATAATAATCTCTCTGGTGTCATTCCATCCAGTTTTAATGAGATGTCAGGCTTGTCTTCTATTGACATATCATACAATCAATTAGAAGGTTCCCTGCCAAACAATCCAGCCTTTCGTAACATTACATTCCAAGCATTGAGGAATAATAAAGGTTTGTGTGGTAATGTCACAGATCTTTGCAATAAATCCAATAATCACGCGCATGGTCACAAGAGCAAAAAAGTCAAGTTATTAGTATTATGCCTCACTTTGAGCACACTAATACTAATACTAGTGGTCGGTGGAGTTATGTGCATTTTTTGTCCAAGTGTGCAAAAAACAGAAAATCAAGATAGCAAAGAACAAGCTCAAGATCTTTATTTTGTATGGAGTTCTGAAAGGGAAATAATGTACGAAAATATCACTGAAGCCACAAAGGATTTTGACGACAAATATCTCATTGGGAAAGGGGGCCAAGGAAATGTTTATAAGGCAGAGTTGCCAACTGGTGAGGTTGTTGCAGTGAAGAAGCTTCATTCAATGCCAGACGGAGAAATCCTAAACCTAAAAGCTTTTACAAGTGAGGTTCGAGCCTTGACAGAAATCAAGCATCGTAACATTGTGAAGCTATATGGGTTTTTTTCAAATTCACAATTCTCATTTTTGGTTTATGAGTTCTTGGAAGGTGGCAGCTTAGATAACATACTAAAGAATGAGAAACATGCCACGAAGCTTAATTGGAATAAGCGGATGAATGTTGTTAAAGGTGTGGCTAATGCTTTGTTCCATATGCATCATGGCTGCTCATACCCTATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTCTAGATTCGGAATATGAAGAAGCTCACATCACTGACTTTGGAACAACCAAGTTTCTGAAGCCGAACTCAAAAAACATGACCGCCTTTGCAGGCACATTTGGGTATGCTGCTCCAGAGATTGCTTACATTATGGAGGCAAATGAGAAATGTGATGTTTACAGCTTTGGAGTACTGACTTTGGAAATCATAATGGGAATGCATCCGGGAGAATTTATTTCCTCTTTGGCAGAGACATCAACTACCTATGATTTGCCATTGAAGAATTTGTTGGACCCACGACTTCCTCTTCCCACTAAACCACTTGTTGAGGACGTGATGTTGATTGCAAAATTAGCATTTGCTTGCTTGAGTGAAAATCCACGTTCTCGGCCAACCATGGAACAAGTATCTATGGAGCTTGAGATGCCAAAATATCATTTAGCGGATAAGTTTGCCACCATCACCATCAGACAACTCATGAAAGTTGAACTTATCAAGTAA 3114 0.3915 MVGRSESDSTKLLASWGLLCIFFCVCVKSSSFQVSASFASVAAEDHNEANALLKWKASLVKQSQDTLSSWNGTGSPCKNWKGISCDESMSVSMINLTNLGLQGRLHNLNFASFPNLHILDISHNMFDGNIPPQIGNLSNIFTLKLFNNFLRGPIPREIGALSTLNLLDIGTCNLTEPIPQEIGNLRNLTYLILKTNHLSGSIPKEIGMLNSLLQLDLSENPLLSGRIPSSIGNLSKLQGLYLYNMSLFGPIPNEIRNLYSLTDLQFINNNLHGPIPPFIGNFTNLTTLELGNNKLFGSIPVSIGNLVNLGILGLGNNNLSGHVPSTIGNLTKLKELVLFTNNLTGLIPPEISNLTNLFNLQLGENDFIGHLPQVCLGQSLEIFGVDTNHFSGPIPRSLKDCSSLYRLRLDNNQLVDNIADAFGVHSNLNYIDLSGNKLYGHLSSKWGKCGNLTSLKIANNNLSGGIPPQLGEATKLGELNLSSNHLRGEIPKELGKLTSLIKLSLSHNQFSGNIPIEIGSLSRLEQLELEANNLSGSIIKDLGQFSNLWLLNLSSNKFEESIPSEFGQLRALRNLDLSRNLLTGTIPTTLGDLESLMTLNLSHNNLSGVIPSSFNEMSGLSSIDISYNQLEGSLPNNPAFRNITFQALRNNKGLCGNVTDLCNKSNNHAHGHKSKKVKLLVLCLTLSTLILILVVGGVMCIFCPSVQKTENQDSKEQAQDLYFVWSSEREIMYENITEATKDFDDKYLIGKGGQGNVYKAELPTGEVVAVKKLHSMPDGEILNLKAFTSEVRALTEIKHRNIVKLYGFFSNSQFSFLVYEFLEGGSLDNILKNEKHATKLNWNKRMNVVKGVANALFHMHHGCSYPIVHRDISSKNVLLDSEYEEAHITDFGTTKFLKPNSKNMTAFAGTFGYAAPEIAYIMEANEKCDVYSFGVLTLEIIMGMHPGEFISSLAETSTTYDLPLKNLLDPRLPLPTKPLVEDVMLIAKLAFACLSENPRSRPTMEQVSMELEMPKYHLADKFATITIRQLMKVELIK 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2279 1037 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 486 1010 - -
Glsi08g2279 1037 SUPERFAMILY RNI-like 341 639 - -
Glsi08g2279 1037 Gene3D Ribonuclease Inhibitor 45 222 IPR032675 -
Glsi08g2279 1037 ProSiteProfiles Leucine-rich repeat profile. 595 616 IPR001611 GO:0005515
Glsi08g2279 1037 Pfam Protein kinase domain 745 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2279 1037 FunFam MDIS1-interacting receptor like kinase 2 822 1017 - -
Glsi08g2279 1037 FunFam Leucine-rich repeat receptor protein kinase EMS1 204 302 - -
Glsi08g2279 1037 FunFam Nuclear pore complex protein NUP107 45 203 - -
Glsi08g2279 1037 Gene3D Transferase(Phosphotransferase) domain 1 822 1026 - -
Glsi08g2279 1037 SMART LRR_typ_2 330 354 IPR003591 -
Glsi08g2279 1037 SMART LRR_typ_2 282 306 IPR003591 -
Glsi08g2279 1037 SMART LRR_typ_2 209 234 IPR003591 -
Glsi08g2279 1037 SMART LRR_typ_2 569 592 IPR003591 -
Glsi08g2279 1037 SMART LRR_typ_2 497 521 IPR003591 -
Glsi08g2279 1037 SMART LRR_typ_2 545 568 IPR003591 -
Glsi08g2279 1037 SMART LRR_typ_2 113 137 IPR003591 -
Glsi08g2279 1037 SMART LRR_typ_2 593 616 IPR003591 -
Glsi08g2279 1037 Gene3D Phosphorylase Kinase; domain 1 704 821 - -
Glsi08g2279 1037 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 355 666 - -
Glsi08g2279 1037 Pfam Leucine rich repeat 571 630 IPR001611 GO:0005515
Glsi08g2279 1037 SUPERFAMILY Protein kinase-like (PK-like) 720 1013 IPR011009 -
Glsi08g2279 1037 SUPERFAMILY L domain-like 69 371 - -
Glsi08g2279 1037 PRINTS Leucine-rich repeat signature 572 585 - -
Glsi08g2279 1037 PRINTS Leucine-rich repeat signature 593 606 - -
Glsi08g2279 1037 ProSitePatterns Tyrosine protein kinases specific active-site signature. 867 879 IPR008266 GO:0004672|GO:0006468
Glsi08g2279 1037 Gene3D Ribonuclease Inhibitor 379 671 IPR032675 -
Glsi08g2279 1037 Pfam Leucine rich repeat N-terminal domain 47 86 IPR013210 -
Glsi08g2279 1037 FunFam Leucine-rich repeat receptor protein kinase MSP1 706 821 - -
Glsi08g2279 1037 Gene3D Ribonuclease Inhibitor 223 378 IPR032675 -
Glsi08g2279 1037 ProSiteProfiles Protein kinase domain profile. 743 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2279 Glsi-ChrGlsi08 17847372 17850599 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2279 31 916 Receptor kinase-like Gene Family AT4G08850 43.275 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi08g2279 Pkinase 3.5e-43 CL0016