Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2260 ATGGTGAGTGGTCCGTACTATGACCAAAATGGACTGAAAAGAGCGTGTGGAGTAAGGAAGAGGATGAAAGGTTTAAGAGCTTATGTTAAAAGATACGGTCATTCCAATTGGCGTCAACTCCTCAAATTTGCAGGTTTATCAAGGTGTGGAAAAAGTTGCAGACTTCGCTGGCTTAGTTACCTGAAGCCAAATATTAAACATGGGAATTACACCCAAGAAGAAGAGAAAATAATCATCAAATTGAATGAACAACATGGAAATAAATGGTCTCAAATTGCCAAACAATTACCCCGAACGACAGACAGTGAAATCAAGAACCACTGGTATAGCCGTCCAAAGAAGCGCATAGAATCCAATGAGGATGAGAAAATGATATCTGAGTTCAAAGTGAGACCTAACGATACTTCTGAAGGAGAAATTACGAATAGTGCTGGTGGTGCTCCCTCCAATGTTCCAGAAAATTCACGGCCCATGTACGCAGAAACATCCTACAATAATGAAATTGAGGACTTCACGGAAGAATCCAGTGCTATTTCTTCATGGGAAATATTTGAAACATTCAACAATTTCTGGACTGAACCATTTATGGTAGAAAATAAACGAAGTCAGAATCACTCTATTCCGGATCCCATCTATGCTACAAATGAATTAGACATGGACCAATATGTTTCATATTTATGGGATAATACAGATTTGTGCCAGGTGATGCAAGAATTGGCAAAAGATCCTAAATAA 735 0.3864 MVSGPYYDQNGLKRACGVRKRMKGLRAYVKRYGHSNWRQLLKFAGLSRCGKSCRLRWLSYLKPNIKHGNYTQEEEKIIIKLNEQHGNKWSQIAKQLPRTTDSEIKNHWYSRPKKRIESNEDEKMISEFKVRPNDTSEGEITNSAGGAPSNVPENSRPMYAETSYNNEIEDFTEESSAISSWEIFETFNNFWTEPFMVENKRSQNHSIPDPIYATNELDMDQYVSYLWDNTDLCQVMQELAKDPK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2260 244 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi08g2260 244 CDD SANT 25 61 IPR001005 -
Glsi08g2260 244 Gene3D - 69 137 - -
Glsi08g2260 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi08g2260 244 MobiDBLite consensus disorder prediction 133 154 - -
Glsi08g2260 244 Gene3D - 22 66 - -
Glsi08g2260 244 Pfam Myb-like DNA-binding domain 25 61 IPR001005 -
Glsi08g2260 244 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Glsi08g2260 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 61 IPR017930 -
Glsi08g2260 244 SMART sant 66 114 IPR001005 -
Glsi08g2260 244 SMART sant 18 63 IPR001005 -
Glsi08g2260 244 ProSiteProfiles Myb-like domain profile. 25 61 IPR001005 -
Glsi08g2260 244 MobiDBLite consensus disorder prediction 135 154 - -
Glsi08g2260 244 SUPERFAMILY Homeodomain-like 25 108 IPR009057 -
Glsi08g2260 244 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 172 - -
Glsi08g2260 244 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2260 Glsi-ChrGlsi08 17336154 17337633 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2260 1 209 MYB Transcription Factor Family AT2G31180 36.239 2.15e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi08g2260 Myb_DNA-binding 2.6e-11 CL0123