Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2254 ATGGAAGTAAATGAGAAATGTGATGTTTACAGCTTTGGAGTACTGACTTTGGAAATCTTAATGGGAATACATCCAGGAGAACTTATTTCTTCTTTGACAGAGACACCAACAGCTTATGATTTTCTATTGAAGGATGTGTTGGACCAGCGACTTTCTCAACCGAAGAAACCAATTGTTGAGGAGGTGATGTTGATTGCAAAATTAGCATTTACTTGCTTGAATAAAAATCCACGATCTCGTCCGACCATGGAACAAGTATCTAATGAGCTTGTGATGCCAAAATTACGTTCAACAGCCGAGTTCCCCACCATCACCCTTAGTCAACTCATGGAAGATTGA 339 0.3953 MEVNEKCDVYSFGVLTLEILMGIHPGELISSLTETPTAYDFLLKDVLDQRLSQPKKPIVEEVMLIAKLAFTCLNKNPRSRPTMEQVSNELVMPKLRSTAEFPTITLSQLMED 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2254 112 ProSiteProfiles Protein kinase domain profile. 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2254 112 PANTHER LEUCINE RICH REPEAT KINASE 2 1 97 - -
Glsi08g2254 112 SUPERFAMILY Protein kinase-like (PK-like) 3 94 IPR011009 -
Glsi08g2254 112 Gene3D Transferase(Phosphotransferase) domain 1 1 92 - -
Glsi08g2254 112 Pfam Protein tyrosine and serine/threonine kinase 3 90 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2254 Glsi-ChrGlsi08 17211754 17212092 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2254 2 90 Receptor kinase-like Gene Family AT4G31100 35.052 8.77e-13 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi08g2254 PK_Tyr_Ser-Thr 1.8e-07 CL0016