Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2250 ATGCAAGCGAATGAGAAATGTGATGTGTATAGCTTCGGTGTTCTAACTTTAGAAATCCTTATGGGAAAGCATCCAGGAGAATTTATTTCTTCTCTGACAGAGACCCCAACAGGCTGTGATTTGCTATTGAAAGATGTGTTGGACTCACGGCTTCCTCAACCCACAAACTCAGTTGTTGAGGAAGTGATGTTGATTGAAAAAATAGCATTTGCTTGCTTAAATGAAAATCCATGTTCTCGCCCAACCATGGAGAAAGTATCTCTTGAGCTTGCGAGGCCAAATCATTTGATTTCATGCTTTTCAAATGAAACACCCAGCATAGCATGGGAAGTGGATAGGGCTTGCAGTGGTTAA 354 0.4124 MQANEKCDVYSFGVLTLEILMGKHPGEFISSLTETPTGCDLLLKDVLDSRLPQPTNSVVEEVMLIEKIAFACLNENPCSRPTMEKVSLELARPNHLISCFSNETPSIAWEVDRACSG 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2250 117 Pfam Protein tyrosine and serine/threonine kinase 3 88 IPR001245 GO:0004672|GO:0006468
Glsi08g2250 117 SUPERFAMILY Protein kinase-like (PK-like) 3 92 IPR011009 -
Glsi08g2250 117 Gene3D Transferase(Phosphotransferase) domain 1 1 99 - -
Glsi08g2250 117 PANTHER LEUCINE RICH REPEAT KINASE 2 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2250 Glsi-ChrGlsi08 17153969 17154769 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2250 5 92 Receptor kinase-like Gene Family AT1G16150 33.684 2.79e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi08g2250 PK_Tyr_Ser-Thr 1.1e-06 CL0016