Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2244 ATGAATGGAAATTCAGACATATATTTGGAGGTTAGGTTTCTTGAAGTATTTAGCTGTAGAATCTTTGCAGTAAGTTATCATATGCTAAGGTATGAACTCAAATCTCCAACCTTTCTTGATATTATCTTGCAAACCATTACAATTGGAGTGGCAATTGGAGCAGGATATAAATTTCTAGGGAGTCAGCCCAAAAGGCATTGCTTGGACAATTTTGCTGCTTATCAGTTTTCTATTTCATTCGTAGGTCAGCCCAAAAGGCATCTTAAGACTGGGTGGAGTGTCTTTGTTAGTGCTAAGAAGCTTGTCGCTGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTGTTGGGTATTCGGCGAGCAAATCATCCCCAGACTGTCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCTGCTCATGTAGCAGCCACAAACAGCCGCTTTACTATATTCTATAACCCTAGGGCAAGCCCATCAGAATTTGTCATTCCCTTGGCCAAAGGGATCAAGTGTCCGTCTGTAGGGATGGCCGCGGGTAGGGCACTATACTCAAACTCAGATCCGTACAAGAATATTAGGCCCAGCCTTGCTCCCATTTAG 633 0.425 MNGNSDIYLEVRFLEVFSCRIFAVSYHMLRYELKSPTFLDIILQTITIGVAIGAGYKFLGSQPKRHCLDNFAAYQFSISFVGQPKRHLKTGWSVFVSAKKLVAGDSVLFIWNEKNQLLLGIRRANHPQTVMPSSVLSSDSMHIGLLAAAAHVAATNSRFTIFYNPRASPSEFVIPLAKGIKCPSVGMAAGRALYSNSDPYKNIRPSLAPI 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2244 210 Pfam Auxin response factor 149 184 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi08g2244 210 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 74 187 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi08g2244 210 SUPERFAMILY DNA-binding pseudobarrel domain 76 151 IPR015300 -
Glsi08g2244 210 Pfam B3 DNA binding domain 74 124 IPR003340 GO:0003677
Glsi08g2244 210 Gene3D - 62 124 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2244 Glsi-ChrGlsi08 17096485 17100200 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2244 65 182 B3 DNA Binding Superfamily AT1G30330 81.513 1.96e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi08g2244 B3 2.8e-07 CL0405