Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2242 ATGCAAGCGAATGAGAAATGTGATGTGTATAGCTTCGGAGTTCTAACTTTAGAAATTCTTATGGGAAAGCATCCAGGAGAATTTATTTCTTCTCTGACAGAGACCCCAACAGTCTATGATTTGCTATTGAAAGATGTGTTGGACTCACGGCTTCCTCAACCCACAAAATCAGTTGTTGAGGAAGTGTTGTTGATTGCAAAAATAGCATTTTCTTGCTTGAATGAAAATCCAATTTCCCGCCCAACCATGGAGAAAGTATCTCTTGAGCTTGCGAGGCCAAATCATTTGGTAGACCAGTTTTCCACCATCACACTTGGGCAACTCATGAAATATTGA 336 0.4018 MQANEKCDVYSFGVLTLEILMGKHPGEFISSLTETPTVYDLLLKDVLDSRLPQPTKSVVEEVLLIAKIAFSCLNENPISRPTMEKVSLELARPNHLVDQFSTITLGQLMKY 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2242 111 Gene3D Transferase(Phosphotransferase) domain 1 1 102 - -
Glsi08g2242 111 Pfam Protein tyrosine and serine/threonine kinase 3 88 IPR001245 GO:0004672|GO:0006468
Glsi08g2242 111 SUPERFAMILY Protein kinase-like (PK-like) 3 91 IPR011009 -
Glsi08g2242 111 PANTHER LEUCINE RICH REPEAT KINASE 2 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2242 Glsi-ChrGlsi08 17052839 17053174 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2242 5 92 Receptor kinase-like Gene Family AT1G16150 33.684 3.53e-11 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi08g2242 PK_Tyr_Ser-Thr 4.4e-07 CL0016