Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2241 ATGAGGCTTTCTTCGTCGAGGTTTAGTCAAGTGGTTCAAGAAGGCGAGAAAAAATGTTTGAATTCTGAACTATGGCATGCATGTGCTGGACCTCTGGTGTCTCTGCCTCTTGCTGGAAGTCGTGTAGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTACTGCTTCAACCAACAAGGAAGTAGATGCACATATTCCCAATTACCCTAACTTACCACCTCAGCTTATTTGTCAGCTTCACAATATGACAATGCATTCAGATGTGGAAACAGATGGAGTATATGCTCAAATGACTCTGCAACCTCTAACTCCACAAGAGCAAAAGGATATCTATCTACTGCCTACAGAATTGGGTACTCCCAGCAAACAACCTACTAATTACTTCTGTAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTCTCTGTTCCTCGAAGAGCCGCTGAAAAAGTCTTTCCTCCTCTTGATTACTCGCAGCAGCCTCCAGCACAAGAACTGATAGCCAGAGATCTTCATGAAAATGAATGGAAATTCAGACATGTATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACGACTGGGTGGAGTGTCTTTGTTAGTGCTAAGAGGCTTGTTGCTGGTGATTCAATCCTTTTCATCTGGAATGAAAAAAATCAATTACTGTTGGGTATTCGGCGAGCACATCGTCCACAGACTGTCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCTGCTCATGCAGCGGCCACAAATAGCCGCTTTACTATATTCTATAACCCTAGGGAAAGCCCATCAGAATTTGTCATTCCCTTGGCCAAGTATGTCAAAGCTGTGTATCATACACGAGTTTCTATTGGCATGCGATTTCGGATGCTCTTCGAGACTGAGGAGTCAAGTGTCCGTCGATACATGGGTACTATAACAGGTATTAGTGATTTAGATCCTGTTCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCTACTGCAGGGGAGATGCAACCAAGAGTTTCCTTGTGGGAGATTGAACCATTGACTACAATCCCAATGTATTCGTCTTCATTTCCTCTGAGGCTGAAGCGTCCTTGGCCATCAGGATTTCCTTCTTTCAATGGTCTCAAGGATAGTGACATGAGCATTAGTCCATTCATGTTGCTCCAAGGTGCACTTGGAGATCAGGGAATGCAATCTTTGGATTTCCAGGGACTTGGAGTTACACCATGGATGCAGCCAAGGCTTGATGCTTCTATACCAGGTCCCCAACCAGATATGTACCAAGCCATGGCAGCTGCTGCTCTCCAGGAAATGAGAACAATGGATCCTTCTAAATCTTCTTCCCAAACTACACTGCAGTTCAAGCAGTCTCCAAATATTCCTGTATCTGCAATCCAGAGGCAAGTGTTGCCACTGTCCCAGCCCCAAAACCCCCTTCTACACAATTTTCAAGAAAACCAGGTGCCTGCTCAGTCTGAGCTTTTGCAACAACAGCTGCAGCATTTTCACCCACGTAATGATCCACAGCAACAGGAGCAGCAGCAACAACAGCAACTGAATAATTTGACTGTTCAGCAGCAGATCCCAAATATCATCTATCCTTTGTCTAATTTTACATCAGCTACCCAGTCTCAATCTCCATCCTTGAAGGCCCTACCTTCACATTCTCAGCTGCAAAGTTTTCCTGAACCTGTTAAGAATCATATTTCCAGCTCTGATGTGACCCCTATCCACAGTTTATTAGGATCATTCTCCCACAATGGAGTATCCCAGTTTCATAACTTGAATGGATCCAACTCTATGATTTCTTCTGCTTCCTTAATACCCAAGCAAGTAACTGTTGACTTTCAGCTTCCATCTGCTGCCGATCAGTGTGTATTGTCCCAGGTGGAAAACTTGGGAACACTGCAATCAAATGTGTCTGAACTTGCAACTTTGCCTTCATTTCCTGGGAGAGAATATTCTGCATACCAAGGTGCTGCTGATCCTCGGAGCAATCTTTTGTTTGGGGTTAACATTGATCCCTCTTCTCTTGTTCTACAGAATGGCATGTCAAACGTAAGAAACATTGGCAATGAGAATAATTCATTGTCAATTGCATTTTCTGCTTCCCACTTTGCTGGTGCTATAAGCACTGATTTTCCACTAAGTTCAGACATGAAAACTTCAAGTTGTGTTGATGAATCTGGCTTCTTGAAGTCATCTGAAAATGTAGACCAAGCAAATACACCAACCGGAACCTTTGTCAAGGTTCACAAGTCAGGGTCCTTTGGGAGGTCACTGAACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAGCTTGCACTATTGTTTAGTCTTGAAGGCCAACTAGAGGACCCTCAGAGATCAGGCTGGCAGCTTGTGTTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCTTGGCAGGAGTTCGTGAACAATGTGTGGTACATCAAGATACTGTCTCCTCTTGAAGTGCAACAAATGGGCAAAGAAGGTCCTGCTACGTCTGCACCAAGTCAGAAACTTTCTTTGACTGGCAACAACACTTGTGACAACTATTGTGAGCCGACAAGAGTTGAAAGGTTCGAGCAACGGCATTTTGGCAATGGGTTCTCTTGA 2676 0.4451 MRLSSSRFSQVVQEGEKKCLNSELWHACAGPLVSLPLAGSRVVYFPQGHSEQVTASTNKEVDAHIPNYPNLPPQLICQLHNMTMHSDVETDGVYAQMTLQPLTPQEQKDIYLLPTELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHENEWKFRHVFRGQPKRHLLTTGWSVFVSAKRLVAGDSILFIWNEKNQLLLGIRRAHRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRESPSEFVIPLAKYVKAVYHTRVSIGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGEMQPRVSLWEIEPLTTIPMYSSSFPLRLKRPWPSGFPSFNGLKDSDMSISPFMLLQGALGDQGMQSLDFQGLGVTPWMQPRLDASIPGPQPDMYQAMAAAALQEMRTMDPSKSSSQTTLQFKQSPNIPVSAIQRQVLPLSQPQNPLLHNFQENQVPAQSELLQQQLQHFHPRNDPQQQEQQQQQQLNNLTVQQQIPNIIYPLSNFTSATQSQSPSLKALPSHSQLQSFPEPVKNHISSSDVTPIHSLLGSFSHNGVSQFHNLNGSNSMISSASLIPKQVTVDFQLPSAADQCVLSQVENLGTLQSNVSELATLPSFPGREYSAYQGAADPRSNLLFGVNIDPSSLVLQNGMSNVRNIGNENNSLSIAFSASHFAGAISTDFPLSSDMKTSSCVDESGFLKSSENVDQANTPTGTFVKVHKSGSFGRSLNISKFSSYDELRSELALLFSLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKEGPATSAPSQKLSLTGNNTCDNYCEPTRVERFEQRHFGNGFS 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2241 891 SUPERFAMILY DNA-binding pseudobarrel domain 113 257 IPR015300 -
Glsi08g2241 891 Gene3D - 755 848 - -
Glsi08g2241 891 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Glsi08g2241 891 FunFam Auxin response factor 292 364 - -
Glsi08g2241 891 SMART B3_2 128 230 IPR003340 GO:0003677
Glsi08g2241 891 ProSiteProfiles PB1 domain profile. 759 843 IPR000270 GO:0005515
Glsi08g2241 891 Gene3D - 126 229 IPR015300 -
Glsi08g2241 891 FunFam Auxin response factor 126 230 - -
Glsi08g2241 891 SUPERFAMILY CAD & PB1 domains 752 833 - -
Glsi08g2241 891 CDD B3_DNA 127 228 IPR003340 GO:0003677
Glsi08g2241 891 MobiDBLite consensus disorder prediction 451 471 - -
Glsi08g2241 891 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 849 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi08g2241 891 MobiDBLite consensus disorder prediction 453 471 - -
Glsi08g2241 891 Pfam AUX/IAA family 749 841 IPR033389 -
Glsi08g2241 891 Gene3D - 292 365 - -
Glsi08g2241 891 FunFam Auxin response factor 754 848 - -
Glsi08g2241 891 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Glsi08g2241 891 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2241 Glsi-ChrGlsi08 17012765 17023784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2241 1 473 B3 DNA Binding Superfamily AT1G30330 82.046 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi08g2241 AUX_IAA 3.4e-06 CL0072