Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2238 ATGCAAGCAAGTGAGAAATGTGATGTTTATAGCTTCGGAGTTCTAACTTTGGAAATCCTTATGGGAAAGCATCCTGGAGAACTAATTTCTTCCTTGACAGAGATCTCAACAGCCTATGATTTGCCCCTGAAGGATGTGTTAGACCAACGGCTTCTTCAGCCCACAAACACAGTTGTTGAGGAAGTGATCTTGATTGCAAGAATAGCATTTGCTTACTTGAATCAAAATCCAGGTTCTCGTCCAACCATGGAACAAGTATCTCTGGAGCTTGTGAGGCCAAAATCTCATTCAATAGGCCAATTTGGCATCATCACAATTGGACAACTGATTATGAAAGATTGA 342 0.4094 MQASEKCDVYSFGVLTLEILMGKHPGELISSLTEISTAYDLPLKDVLDQRLLQPTNTVVEEVILIARIAFAYLNQNPGSRPTMEQVSLELVRPKSHSIGQFGIITIGQLIMKD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2238 113 SUPERFAMILY Protein kinase-like (PK-like) 3 87 IPR011009 -
Glsi08g2238 113 Gene3D Transferase(Phosphotransferase) domain 1 1 92 - -
Glsi08g2238 113 PANTHER LEUCINE RICH REPEAT KINASE 2 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2238 Glsi-ChrGlsi08 16988179 16988520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2238 2 99 Receptor kinase-like Gene Family AT3G08680 35.135 1.30e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi08g2238 None None None