Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2233 ATGCAAGTGGATGAGAAATGTGATGTTTATAGCTTCGGAGTTCTAACTTTGGAAATCCTTATGGGAAAGCATCCTGGAGAACTTATTTCTTCTTTGATAGAGATCCCAACAGCCTATGATTTGCTATGGAAGGATGTGTTAGACCAACGGCTTCCTCAGCCCGCAGACACAGTTGTTGAGGAAGTGATGTTGATTGCAAAAATAGCATTTGATTGCTTGAATCAAAATCCACGTTCTCGTCCAACCATGGAACAGCAGTTATTGTCAGGGACTGAAATGGAATTCTACTTATCGGATCTACTAAATCCTGCTCAGCCCGTTCGGCCATGGATTCCGAAGCAAAAGCAATGGCAGAGGCAGAAAAACGCTTGA 372 0.4301 MQVDEKCDVYSFGVLTLEILMGKHPGELISSLIEIPTAYDLLWKDVLDQRLPQPADTVVEEVMLIAKIAFDCLNQNPRSRPTMEQQLLSGTEMEFYLSDLLNPAQPVRPWIPKQKQWQRQKNA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2233 123 Pfam Protein tyrosine and serine/threonine kinase 3 85 IPR001245 GO:0004672|GO:0006468
Glsi08g2233 123 PANTHER LEUCINE RICH REPEAT KINASE 2 1 86 - -
Glsi08g2233 123 Gene3D Transferase(Phosphotransferase) domain 1 1 97 - -
Glsi08g2233 123 ProSiteProfiles Protein kinase domain profile. 1 96 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2233 123 SUPERFAMILY Protein kinase-like (PK-like) 3 107 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2233 Glsi-ChrGlsi08 16899450 16900766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2233 5 99 Receptor kinase-like Gene Family AT1G07650 42.202 2.70e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi08g2233 PK_Tyr_Ser-Thr 3.9e-07 CL0016