Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2229 ATGACCTCATTTGTTGGCACCTTTGGGTATGCTGCACCAGAGATTGCTTTTACTATGCAAGCGAATGAGAAATGTGATGTTTATAGCTTTGGAGTTCTAACTTTGGAAATCTTTATGGGAAAGCATCCTGGAGAACTTATTTCTTCTTTGATAGAGATCTCAACAATCTATGATTTTCCATTGAAGGATGTGTTAGACCAACGGCTTCCTCAGCCCACAAACACAGTTGCTGAGGAAGTGATCTTGATTGCAAAAATAGCATTTACCTGCTTGAATCAAAATCCACATTCTCGTCCAACCATGGAACAAATATCTTCGGAGATTCTGAGGCCAAAATCTCATTCAGTACACCAATTAGCCAACATCACAATTGGACAACTGATTATGAAAGATTGA 396 0.3889 MTSFVGTFGYAAPEIAFTMQANEKCDVYSFGVLTLEIFMGKHPGELISSLIEISTIYDFPLKDVLDQRLPQPTNTVAEEVILIAKIAFTCLNQNPHSRPTMEQISSEILRPKSHSVHQLANITIGQLIMKD 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2229 131 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2229 131 SUPERFAMILY Protein kinase-like (PK-like) 1 106 IPR011009 -
Glsi08g2229 131 PANTHER LEUCINE RICH REPEAT KINASE 2 1 114 - -
Glsi08g2229 131 Gene3D Transferase(Phosphotransferase) domain 1 1 125 - -
Glsi08g2229 131 Pfam Protein tyrosine and serine/threonine kinase 9 107 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2229 Glsi-ChrGlsi08 16768187 16769052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2229 2 115 Receptor kinase-like Gene Family AT1G16150 33.058 5.72e-17 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi08g2229 PK_Tyr_Ser-Thr 1.2e-11 CL0016