Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2224 ATGGAACACATCTTGTCATCGCCACGTGGCACCACCCAGACTAAAGTTTCGGATAACACCCGCCATGTGCATGGAGAATTAGATTTTCTTTTGCATTTAAAAGAAAGAACAACCAAAAACCCAGAGAGGCATTTTCCAGAGACCCAGACCCCATTTATAGCCCTGGCTGGTCCCTGGTCCCGCATTCACACTAACACTCTCTCCGATTCATCTTATCAGTTGCCACCTAGGGGGCTTCTGTTTCTGAATTCCTTGTATTTCTGGTTTGACAAGTCAGGAAACTGCCTCAGCTCAGATAACTGGCCCATAGGGCAAGACCGAGAACTTGTGGAGCTCCTATGGCAAAATGGGCAGGTGGTTAGGCACAGCCAAACACAAAGGAAACCGGTTATGAATTCTTTGGACTCAAGGCAGTTTCAGAAAAATGATCAATCAACAATCAGGGCCAGTGAGTCATTTGGGAACTCAAGTAATTTGATTGAAGACGAGACAGTCTCATGGTTCCAATACACACTTGAGGATCCATTGGAACAAGAATTCTCCTCAAACTTTTTATCTGATCTGCCATCCTGTGCAGTTGAGCCTGATAAGCCAATCAGACAGTTTGAAGAAGGAAAGTGTGGCAAATTTGGAACCTACAGTGCACTCCATGAGACTGCAAGTTCACAAACACCTAAGATAAAACCCTCCTGTGCTCAGGATTCACGAAATCCTTTGCCTGCTCCAAGCTTTCATTTTCCTGATTCACCCCAGAAAAACATTGACTTTGGTGGAGCACAAAAAGTTGCCAATTTTTCTCAGTTTTTAGTACGCCCCAAGGTGGCTTCAGCATCTTCAAATAAACAATTAGAAGAGATACGTACTGGTCATCTATTGCAAAGTGAAGCTAGGGAGTGCTCAGTGAGGACAGTTGGTTCAAGTCACTGTGGCAGCAACCAACTCCCTCAGGACCCGGATATAAGCAGGGTATCAAGCAATGCTGTTTGGGCCCCTACTTTATATGCTGAGCCTGAACCATTCAAGCATGATGTCCAGAAAACAATTCCTCAAAGTGAAAAAGGGAAATCAGATGCGATTGAACCAACTCTGACTTCATCATCCGATGGTTCAGGCAATAGTCTTGCAAAAACATGCTCCATCTCTACAAGAAACCATGGCCAAAAAAGGAAAAAGACTGATGCAGAAGAATCAGAGGAACAAAGTGAGGCCACAGAACTCAAGTCAGCTGTTGAAAACAAGGCAGCTCAGAGGACAGGGTCTTCCCGAAGGAATCGTGCAGCAGAAGTGCATAATCTCTCAGAAAGGAGACGAAGAGATAGGATCAATGAGAAGATGAGGGCATTGCAACAACTCATACCTCACAGCAACAAGACAGACAAAGCATCAATGCTGGATGAGGCAATTGAATATTTGAAGTCACTTCAGCTACAACTTCAGGTAATGTGGATGGGAGCTGGCATGGCACCAGTGATGTTTCCCGGAATTCAGCACTATATGTCCCAAATGGGTATGGGAATGGCTGCACCTTTGCCTTCTCTTCACAATCTGATGCAATTACCAAGAGCATCACTTGATCAGCCCATATCTGTGGCTCCAACACCAAACCAGACTGCAATGTGTCAAACTCCTGTTTTGGGTCCCTTCACTTACCAAAGTCAGATGCAAAACCAAGCTCTTTCAGAGCAGTATGCACGTTACATGGGGTATCATCTCATGCAAAGTGCCTCCCAGCCAATGAACGTATTTGGATATGGTTCCCAGGCAGTACAACATAGTCAAACAATGATTCCACCCAGCAGTAGCAGTGGTTCCCCGAATGGAGCAGCTAATATTGATGATACCATAAGTGGAAAGATGGGTAAACCACTTATATAA 1875 0.448 MEHILSSPRGTTQTKVSDNTRHVHGELDFLLHLKERTTKNPERHFPETQTPFIALAGPWSRIHTNTLSDSSYQLPPRGLLFLNSLYFWFDKSGNCLSSDNWPIGQDRELVELLWQNGQVVRHSQTQRKPVMNSLDSRQFQKNDQSTIRASESFGNSSNLIEDETVSWFQYTLEDPLEQEFSSNFLSDLPSCAVEPDKPIRQFEEGKCGKFGTYSALHETASSQTPKIKPSCAQDSRNPLPAPSFHFPDSPQKNIDFGGAQKVANFSQFLVRPKVASASSNKQLEEIRTGHLLQSEARECSVRTVGSSHCGSNQLPQDPDISRVSSNAVWAPTLYAEPEPFKHDVQKTIPQSEKGKSDAIEPTLTSSSDGSGNSLAKTCSISTRNHGQKRKKTDAEESEEQSEATELKSAVENKAAQRTGSSRRNRAAEVHNLSERRRRDRINEKMRALQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGAGMAPVMFPGIQHYMSQMGMGMAAPLPSLHNLMQLPRASLDQPISVAPTPNQTAMCQTPVLGPFTYQSQMQNQALSEQYARYMGYHLMQSASQPMNVFGYGSQAVQHSQTMIPPSSSSGSPNGAANIDDTISGKMGKPLI 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2224 624 MobiDBLite consensus disorder prediction 357 382 - -
Glsi08g2224 624 MobiDBLite consensus disorder prediction 348 439 - -
Glsi08g2224 624 MobiDBLite consensus disorder prediction 423 439 - -
Glsi08g2224 624 MobiDBLite consensus disorder prediction 592 611 - -
Glsi08g2224 624 CDD bHLH_AtPIF_like 425 488 IPR047265 -
Glsi08g2224 624 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 425 474 IPR011598 GO:0046983
Glsi08g2224 624 MobiDBLite consensus disorder prediction 386 406 - -
Glsi08g2224 624 FunFam Basic helix-loop-helix transcription factor 420 483 - -
Glsi08g2224 624 SMART finulus 431 480 IPR011598 GO:0046983
Glsi08g2224 624 Pfam Helix-loop-helix DNA-binding domain 429 475 IPR011598 GO:0046983
Glsi08g2224 624 Gene3D - 420 481 IPR036638 GO:0046983
Glsi08g2224 624 MobiDBLite consensus disorder prediction 592 624 - -
Glsi08g2224 624 PANTHER TRANSCRIPTION FACTOR PIF3 96 590 IPR044273 GO:0003700|GO:0006355
Glsi08g2224 624 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 422 487 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2224 Glsi-ChrGlsi08 16629200 16632844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2224 88 604 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 34.717 2.64e-56 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi08g2224 HLH 2.4e-14 No_clan