Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2205 ATGGATAATCCAAACGAAGCGTCATCATCCTTGAGTTTTGCATCATCTTACTTATCAAATGGATCTAGTAATCACAACATATCTGCCTCAGCCAACAATGAGCTTTGTGGGGTAAATCTAGAAAATTTGAGTTTAAGTAAGCTCAGTGGAAGTCTCGAGAAGTTATTAATTGATGCTGAATATGACTATAGTGACGCAGAGATTGTTGTGGAGGACATTCCTGTGGGTGTTCATCGGTGTATATTGGCTTCACGTTGTCAGTTTTTTCATGAACTTTTTAAGAAACGAAATGATGGTTCAGTGAAGGATGGTAAGCCAAGGTATCTCATGTCGGAACTGGTGCCTTCTGGGGTAGTTAGATATGAAGCCTTCCTGGTTTTCTTGCATTATTTGTATACTGGAAAGCTTAAGATGTCACCACCAGAAGTATCAACATGTGTTGATGAAGGATGTGCCCATGATGCATGCCGCCCTGCTATTAATTATGCTTTAGAACTAATGTTTGCTTCTGCCACTTTTCAGATGAAAGAGCTCGTTTTACTTGCTCAGCGGCGTCTCCTCAATTTTGTTGAGAAGGCTCTTGTGGAAGATGTCATTCCTATTCTTTCAGCTGCCTTCCACTTCCAACTAAACCAGCTTCACTCACACTGCATCCAAAGAGTAGCAAGGTCTGATCTTGACTACATAACTCTGGATAAAGAGCTCCCACATGAAGTTGTGAGTGATATCAAATCCCTCCGAATCCAATTTCTTCCAGAATCCACACCGGATGCAATGGAAGTGGAACATTCTAATGAAAAGAGTATAAGGAGAATCCTTAAAGCATTGGATTCTGATGATGTTGAGCTGATGAAGCTTCTTTTGGATGAGTCTGGTGTCACTCTAGATGATGCTTATGCCCTCCACTATGCCTGTGCCTATTGCGATTCTAAGATTGTTCAAGAGGTTCTTAATCTGGGGTTGACTGATCTTAACCGGAGGAATCCCCGAGGATATACTGTTCTTCACATGGCTGCAAGGCGAAAAGATCCAACAATTTTAGTAGCGCTGCTGAGTAAAGGGGCCTGTGCATCAGATACCACATTGGATGGACAAACTGCTGTTGCAATTTGTCGGAGGTTGACAAGACCCAAGGACTATAATGAGATAACAATGAAGGGGAAGGAGTCTAACAAAGACAGGCTCTGTGTTGATGTCCTGGAGAGAGAGATGAGAAGAACTTCTATGTCTGTGAATGCATCAGTTTCACCACATTTAATTGCTGATGATTTGCACATGAGATTGGATTACCTGGAAAATAGAGTTGCATTTGCTAGGCTGTTGTTTCCTGTTGAGGCTAAGGTAGCCATGGAGAACGCGGAGGCAGATTCAACACTGAGAGAAGTTGATCTAAATGAAACTCCCTCTGCGCGAACCAGAAAAGTCCAGTTAAGATTGCATTCCCTTCAGAAAACAGTTGAGAATGGCCGGCGCTTCTTTCCCCATTGCTCAGAGGTTCTTGATAAGTTTCTAGAGGACGATATGCCTGACCTTTTCTTCCTAGAGAAGGGCACAGAAGAAGAGCAGAGAATGAAGAAATCACGCTTTGTGGAACTCAAAGAGGACGTGCAGAAGGCATTTCACAAGGACATGGCTGAAAAAAATCATTCAGTTTTCTCATCCTCACTTTCTTCCTCATCATCCTCATCTCCTAGGAAAGGTCTAGGCCAAAGAGTGAGGAAAAAGTGA 1728 0.4259 MDNPNEASSSLSFASSYLSNGSSNHNISASANNELCGVNLENLSLSKLSGSLEKLLIDAEYDYSDAEIVVEDIPVGVHRCILASRCQFFHELFKKRNDGSVKDGKPRYLMSELVPSGVVRYEAFLVFLHYLYTGKLKMSPPEVSTCVDEGCAHDACRPAINYALELMFASATFQMKELVLLAQRRLLNFVEKALVEDVIPILSAAFHFQLNQLHSHCIQRVARSDLDYITLDKELPHEVVSDIKSLRIQFLPESTPDAMEVEHSNEKSIRRILKALDSDDVELMKLLLDESGVTLDDAYALHYACAYCDSKIVQEVLNLGLTDLNRRNPRGYTVLHMAARRKDPTILVALLSKGACASDTTLDGQTAVAICRRLTRPKDYNEITMKGKESNKDRLCVDVLEREMRRTSMSVNASVSPHLIADDLHMRLDYLENRVAFARLLFPVEAKVAMENAEADSTLREVDLNETPSARTRKVQLRLHSLQKTVENGRRFFPHCSEVLDKFLEDDMPDLFFLEKGTEEEQRMKKSRFVELKEDVQKAFHKDMAEKNHSVFSSSLSSSSSSSPRKGLGQRVRKK 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2205 575 Gene3D - 257 402 IPR036770 -
Glsi08g2205 575 MobiDBLite consensus disorder prediction 550 575 - -
Glsi08g2205 575 ProSiteProfiles Ankyrin repeat profile. 330 355 IPR002110 GO:0005515
Glsi08g2205 575 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Glsi08g2205 575 FunFam regulatory protein NPR3-like 264 404 - -
Glsi08g2205 575 SMART ANK_2a 330 362 IPR002110 GO:0005515
Glsi08g2205 575 SMART ANK_2a 296 326 IPR002110 GO:0005515
Glsi08g2205 575 Pfam BTB/POZ domain 61 139 IPR000210 GO:0005515
Glsi08g2205 575 Pfam Domain of unknown function (DUF3420) 225 273 IPR024228 -
Glsi08g2205 575 Gene3D Potassium Channel Kv1.1; Chain A 36 222 IPR011333 -
Glsi08g2205 575 FunFam Regulatory protein NPR3 38 222 - -
Glsi08g2205 575 Pfam NPR1/NIM1 like defence protein C terminal 372 559 IPR021094 -
Glsi08g2205 575 PANTHER REGULATORY PROTEIN NPR3 15 564 IPR044292 GO:0009862|GO:2000022|GO:2000031
Glsi08g2205 575 ProSiteProfiles Ankyrin repeat region circular profile. 330 355 - -
Glsi08g2205 575 SUPERFAMILY POZ domain 54 188 IPR011333 -
Glsi08g2205 575 SMART BTB_4 64 190 IPR000210 GO:0005515
Glsi08g2205 575 SUPERFAMILY Ankyrin repeat 261 374 IPR036770 -
Glsi08g2205 575 CDD BTB_POZ_NPR_plant 53 190 - -
Glsi08g2205 575 Pfam Ankyrin repeats (3 copies) 278 355 IPR002110 GO:0005515
Glsi08g2205 575 MobiDBLite consensus disorder prediction 550 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2205 Glsi-ChrGlsi08 16445163 16451137 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Glsi08g2205 NPR1_like_C 2.6e-76 No_clan