Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2201 ATGGAAGTAGCAAAGGGAAATTGCTCAGCAAACATTAAGGAAGATGAAGCTATGCTTCCTGGCTTTAGATTTCACCCCACAGATGAAGAGCTCGTTGGGTTTTATCTGCGGCGAAAGGTTGAGAAGAAGCCTCTTCGAATCGAACTCATCAAGCAGATTGACATATACAAATATGATCCTTGGGATCTTCCAAAAGTGAGTTCAGTGGGGGAGAATAAGGAATCGTACTTCTTCTGCATAAGAGGGAGGAAGTACAGGAACAGCATAAGGCCAAACAGGGTGACTGGTTCTGGGTTCTGGAAGGCGACAGGTATAGACAAGCCCATTTACAGCGTTAGGGAACCCCATGAATGCATTGGCCTCAAGAAGTCTTTGGTCTATTACCGTGGAAGTGCCGGCAAAGGCACTAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCACCTCCCAACCATGGCAAACCTAACAATAATCTTCAAGCTAATGCTACCTGCAGTATTGCTCTTCAAGAAGCTGAAGTGTGGACACTATGCAGAATATTCAAAAGAATCCCATCTTACAGAAGGTACACATCAAGTTTGAAAGACACAGTCGCCCCCACCAAACAGAACCCGACTGATTCAAGTTCTAAAACACGCAGCTTAGAATCTGAACAAAACAGCAAGCCATACTTGACTTTCTTAGACTCAGTCAATAATATTTATGGGCAAATTGAAAGAAAACCAGTTCTTGGAGTGCGGGCTCCAGATGAAGGGAGCCCTCTCTTTTTGGGTCAGTTAGGCCCACAACCTGTGGCTCAAGTTCCATCATCAATGGTGACTAACCCATCAAGCTTCTTGAATCAGAATGTGGAGGACGTGTTTGCAAATGGGAACTGGGATGAGCTCAGATCTGTTGTTCAGTTTGCTATTGATCCATCCACTGTTTATGATCGTACATACTTAGATAGGTAG 954 0.4423 MEVAKGNCSANIKEDEAMLPGFRFHPTDEELVGFYLRRKVEKKPLRIELIKQIDIYKYDPWDLPKVSSVGENKESYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVREPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPPNHGKPNNNLQANATCSIALQEAEVWTLCRIFKRIPSYRRYTSSLKDTVAPTKQNPTDSSSKTRSLESEQNSKPYLTFLDSVNNIYGQIERKPVLGVRAPDEGSPLFLGQLGPQPVAQVPSSMVTNPSSFLNQNVEDVFANGNWDELRSVVQFAIDPSTVYDRTYLDR 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2201 317 ProSiteProfiles NAC domain profile. 18 183 IPR003441 GO:0003677|GO:0006355
Glsi08g2201 317 MobiDBLite consensus disorder prediction 195 219 - -
Glsi08g2201 317 SUPERFAMILY NAC domain 14 182 IPR036093 GO:0003677|GO:0006355
Glsi08g2201 317 Pfam No apical meristem (NAM) protein 20 147 IPR003441 GO:0003677|GO:0006355
Glsi08g2201 317 FunFam NAC domain-containing protein 35 27 186 - -
Glsi08g2201 317 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 219 - -
Glsi08g2201 317 Gene3D NAC domain 27 186 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2201 Glsi-ChrGlsi08 16396918 16401081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2201 15 201 NAC Transcription Factor Family AT5G39820 58.163 1.09e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi08g2201 NAM 1.9e-33 No_clan