Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2177 ATGGATGAACCCCTTCTCTCGAAGAAATTGGGAGTGGTAGAATCATCTAGCAGGCCATCAACCATAAGAGAATTTCCCCCATCTTTCCTCGATCTTAGCCCACTCAGGCGCCAATCTACCGCTCGTCTCATCACCAATGAAGAAATCATTGAGATCATCACCACACCCAAAACCCCTTCCTACTTGAACCTCATAGCCAACTTGAACAGGAAAAGGAAGATTAACCGTCGCTCACACTCTGCCCCATCGGTCTTCACTGATATCAGAGACGAATGGCATGATCCTCTTGACCCCAGAACTGACAAAAGCTCTTCACCTTTGATAGTGAAACTATCCTTTCTTGGTGTTATCTTGTACGTAGCAATTGGGGTTGCAGTTTACCTGATAAGTGGAAGTTTCAGGGGCAAATCCACAAGCAAGCCTGTAGATGCTGTGTACTACACAGTGGTAACTCTCTGCACAATAGGGTATGGAGATATTGTTCCTGACACTGCATTTACCAAAATGTTCACTTGTGGTTTCATTTTGGTGGGTTTTGGATTTGTGGGTATTCTGCTAAATGGGTTGGTCACATACATTTGTGATAGGCAAGAGGCATTGTTACTGAGTACCGTGGATGAGAATCGGTTCAACACAATCGTTAGAACCTATATGATTGATAAAGAAAAAGGAAGAATGAGGATAAGAACTAAAGTGAGCCTAGCTTTGACAGTTGTTATTGGCTGCATTGTTCTGGGAACAATAACAGCACATTTTCTAGAGAAATTGAATTGGGTGGACAGCTTTTATCTCTCTGTTACTTCTGTTACAACAGTGGGTTATGGTGACTATGCTTTCGCAACATTGAAGGGAAGGTGTTTTGCAATAATATGGCTATTGGTAAGCACATTAGCAGTTGGCAGGGCCTTTCTATACCTTACTGAATATTGTGTTGACAAGAGAAATCGCGGCATCGCAAAATGGATTCTTCAGAGGAAAATTACCTTATCAGATTTAGTGGCTGCAGACCTTGACAATGATGGATCAATCAGTAAGTCTGAATTTGTCATATACAAGCTTAAGGAGATGGGTAAGATAACGGAGATTGACATTCAGCAAATAAGCAAACAATTTGATTCGTCGGACAGTAGCAAATGTGGCAAGATTACCCTTGCTGACATCATGGAAACAGTTTAA 1176 0.4175 MDEPLLSKKLGVVESSSRPSTIREFPPSFLDLSPLRRQSTARLITNEEIIEIITTPKTPSYLNLIANLNRKRKINRRSHSAPSVFTDIRDEWHDPLDPRTDKSSSPLIVKLSFLGVILYVAIGVAVYLISGSFRGKSTSKPVDAVYYTVVTLCTIGYGDIVPDTAFTKMFTCGFILVGFGFVGILLNGLVTYICDRQEALLLSTVDENRFNTIVRTYMIDKEKGRMRIRTKVSLALTVVIGCIVLGTITAHFLEKLNWVDSFYLSVTSVTTVGYGDYAFATLKGRCFAIIWLLVSTLAVGRAFLYLTEYCVDKRNRGIAKWILQRKITLSDLVAADLDNDGSISKSEFVIYKLKEMGKITEIDIQQISKQFDSSDSSKCGKITLADIMETV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2177 391 FunFam Two-pore potassium channel 2-like 210 334 - -
Glsi08g2177 391 Pfam Ion channel 116 193 IPR013099 -
Glsi08g2177 391 Pfam Ion channel 238 309 IPR013099 -
Glsi08g2177 391 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 142 366 IPR003280 GO:0005267|GO:0016020|GO:0071805
Glsi08g2177 391 SUPERFAMILY Voltage-gated potassium channels 104 193 - -
Glsi08g2177 391 PRINTS Two pore domain K+ channel signature 270 279 IPR003280 GO:0005267|GO:0016020|GO:0071805
Glsi08g2177 391 PRINTS Two pore domain K+ channel signature 150 178 IPR003280 GO:0005267|GO:0016020|GO:0071805
Glsi08g2177 391 Gene3D - 199 328 - -
Glsi08g2177 391 SUPERFAMILY EF-hand 335 389 IPR011992 -
Glsi08g2177 391 SUPERFAMILY Voltage-gated potassium channels 220 326 - -
Glsi08g2177 391 FunFam Two-pore potassium channel 2-like 107 203 - -
Glsi08g2177 391 ProSitePatterns EF-hand calcium-binding domain. 336 348 IPR018247 -
Glsi08g2177 391 Gene3D - 97 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2177 Glsi-ChrGlsi08 16052905 16055966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2177 76 389 Ion Channels AT4G18160 50.794 1.83e-105 316