Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2152 ATGGATAGAGATCAAAAGCAAGATAAGGGGAACCAGAATAGCCCAGGCATTGATGTTCCACCTATGTCCCCCCGAGTCCCAAAAGCAGTTTCTCCAGTTTCTTTTGCAGCAGAGGAAGAAACCTTTAAGCGACCTCGTGGCCGACCTGCCGGCTCCAAAAACAAGCCAAAGCCACCCATTATTGTCACTAGAGATAGTGCTAACGCACTAAGGGCTCATGCACTGGAAGTGAGTTCTGGATGTGATATAAATGAGAGTTTGCTGAACTTTGCAAGAAGGAAGCAGCGTGGGATTTGCATACTTAGTGGAACTGGCTGTGTGGCCAATGTTACATTGCGCCAACCAGCTTCGTCTGGTGCAACATTGACCCTTCATGGTCGGTTTGAGATTCTCTCACTGCTAGGGTCAATCCTGCCTCCACCGGCACCACCGGGGATCACAGGCCTTACAATTTACTTAGCAGGTGCTCAAGGGCAGGTTGTGGGTGGTGCTGTAGTGGGTGCTCTGATTGCTTCAGGTCCTGTTGTGATAATGGCTGCTTCATTCATGAATGCTATTCTTGATCGTCTGCCATTGGAGGAGGATGAAGTTGCTCCAGCTATGCAGAATCAGCATTACCAAAATGGTCGCAGCCATCGTCATCATCTTGATATCTCAGATTTCTATGGAATGCCACAGAACTTGTTCACGAATGGTACAGTGCCCCCTGAGATATGCTCTTGGACGCCTGGGAGGAACTTGTCAAAAGCTTGA 753 0.4874 MDRDQKQDKGNQNSPGIDVPPMSPRVPKAVSPVSFAAEEETFKRPRGRPAGSKNKPKPPIIVTRDSANALRAHALEVSSGCDINESLLNFARRKQRGICILSGTGCVANVTLRQPASSGATLTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPVVIMAASFMNAILDRLPLEEDEVAPAMQNQHYQNGRSHRHHLDISDFYGMPQNLFTNGTVPPEICSWTPGRNLSKA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2152 250 CDD DUF296 71 153 IPR005175 -
Glsi08g2152 250 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 211 IPR014476 GO:0003680
Glsi08g2152 250 Pfam Plants and Prokaryotes Conserved (PCC) domain 71 183 IPR005175 -
Glsi08g2152 250 Gene3D - 70 205 - -
Glsi08g2152 250 ProSiteProfiles PPC domain profile profile. 67 203 IPR005175 -
Glsi08g2152 250 SUPERFAMILY AF0104/ALDC/Ptd012-like 67 198 - -
Glsi08g2152 250 MobiDBLite consensus disorder prediction 1 60 - -
Glsi08g2152 250 FunFam AT-hook motif nuclear-localized protein 70 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2152 Glsi-ChrGlsi08 15595872 15596624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2152 26 249 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 71.111 3.98e-100 290