Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2146 ATGTTAAGTAATGGTGCTGCAGGACCTGCAGGTCCATCTGAGATTTCCTCACTTAATGTTGCTAAAAGAGTGGAAAGCATAGCATGTGAAATACCACATGGGATTGATGCAAATCATGCATTGAGTGATGTTAGCTTGTTTTCTAGCTCACTGCCGGTTCTTTCACATAAAAAGTTAAATTTTACTGATTCAGAGCATTACGGTCAATCTATTGATGATAACTTGCCAATATTGAACAATCGCAAGGAAGATGAGGAACGTGATCCTCTTGAAGATGTTGAAACCAATGCATTTGGAAACATGCTTCCTAATGATGAAGAAGACTTATTAGCTGGGATAATGGCTGACTTTGACCTTAGTAGGTTGCCCAGCCAACTGGAGGATCTGGATGAAAATGATCTGTTTGGTAGTGGAGGAGGGCTTGAAATGGATTTTGAACCCCAAGAGAGCCTTAATTTTGGTATCTCAAAGATAAGCATATCTGATGGAGTTGCTTCAAATGGGACTATTGGTCATTATGTACTTCCAAATGGTGTGGGAACAGTGGCTGGGGAGCATCCCTATGGTGAGCACCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTAAGATCACTATTTGAGCAATATGGTGATATCAGAACTTTGTATACTGCATGCAAGCATAGGGGATTTGTGATGATATCTTACTATGACATTAGAGCTGCTCGCATTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGACATACATTTTTCAATTCCTAAGGATAACCCTTCTGAAAAGGATATAAACCAAGGAACTCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGACGACCTTCGTCAAATATTTGGTGCTTATGGAGAGGTCAAAGAGATAAGGGAAACGCCACATAAGAGACACCATAAATTTATTGAATATTATGATGTTAGAGCGGCAGAGGCAGCTCTTAAAGCATTAAATCGATGTGATATTGCTGGGAAACGCATCAAACTTGAACCCAGTCGCCCTGGAGGAGCACGTCGAAGTTTAATGCAACAGCTGAGTCAAGAGCTGGAGCAAGATGACGCTAGGACTTTTAGATATCAAGTGGGTTCGCCAATGGCCAATTCTCCTCCTGTTCTTTCACCTCATGCATCAACCTCTACAAAGATTGCTCCGATTGGCAAGGACCCTGGAAGGGTTAATAATGCAAATCAGATATCTACAAATTCTGGATCAACACTGGGAGCATCTTTTCAGCATTCTCTGTCCTTTCCTGAGCAAAATGCAAATGCAATTTCGAGACCAATATCTACGTTTGGAGAACTAAATTCAAGTTTTTCGAGCATTGGAACACTGTCTGGGCCTCAATTTCTGTGGGGAAGTCCAACTCCGTACGCAGAGTATTCAAATACATCTGCTTGGTCTTCATCTTCCATGGGACTCCCATATAAAACTAGTGGCCAGAGGCAGGGATTCCCATTTACTAATCGGCCTAGTTCTTTTTTTGGTTCCCAACCCCACCATCATGTAGGATCTGCTCCATCTGGCCTTCCTCTTGATAGGCAAGTTAGTCACTTCCCAGAGTCTCCAGAAGCTTCTTTCATGAATCGGGGTGCATTTAGGAGTTTAAATCACAGTGATGGCAGTTTTATGATGAACATGGGTGCTCATGCTACTGTAGGAGTTGGTGTTGGCCTTTCAGGAAACACAAAGGAAATTATTTCACCCAGCTTCAGAATGATGCCATTGCCTAGACAGAATTCCTTTTTCCTTGGAAATGGTTCCTATTCAGGACCAGGAGCAACTAACAATGAGGGATTAGCTGAACACAGTAGAAGTCGGCGACTTGAAAATACTGGGAACCAGATAGACAGCACGAAGCAGTTTCAGCTTGATCTGGACAAAATTATCAGTGGGGAAGATACAAGGACCACGTTAATGATTAAAAACATTCCTAACAAGTATACTTCAAAGATGCTTCTGGCTGCAATTGATGAGAATCACCAGGGTACTTATGACTTTCTCTACTTGCCAATTGACTTTAAGAACAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTCCTTCACACATCATCCCCTTCTACAAGGCATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCCTCCCTGGCATATGCACGAATCCAGGGAAAGGCTGCGCTGGTGACACACTTCCAGAATTCAAGTCTAATGAATGAGGACAAGCAATGCCGGCCAATTGTCTTTCATTCAGAGGACCAAGAGGCTGGTGACAAGGAACCGTTACTGTCCAGCAATTTAAATCTATTCGTTCGCCAACCCAATGGGTCATACTCAGGTGCTTTGTTGGAGCGCCCTAAGGACAATTTAAATGAGAAGCTGGAGACAAATTAA 2442 0.4201 MLSNGAAGPAGPSEISSLNVAKRVESIACEIPHGIDANHALSDVSLFSSSLPVLSHKKLNFTDSEHYGQSIDDNLPILNNRKEDEERDPLEDVETNAFGNMLPNDEEDLLAGIMADFDLSRLPSQLEDLDENDLFGSGGGLEMDFEPQESLNFGISKISISDGVASNGTIGHYVLPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARIAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKALNRCDIAGKRIKLEPSRPGGARRSLMQQLSQELEQDDARTFRYQVGSPMANSPPVLSPHASTSTKIAPIGKDPGRVNNANQISTNSGSTLGASFQHSLSFPEQNANAISRPISTFGELNSSFSSIGTLSGPQFLWGSPTPYAEYSNTSAWSSSSMGLPYKTSGQRQGFPFTNRPSSFFGSQPHHHVGSAPSGLPLDRQVSHFPESPEASFMNRGAFRSLNHSDGSFMMNMGAHATVGVGVGLSGNTKEIISPSFRMMPLPRQNSFFLGNGSYSGPGATNNEGLAEHSRSRRLENTGNQIDSTKQFQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKQCRPIVFHSEDQEAGDKEPLLSSNLNLFVRQPNGSYSGALLERPKDNLNEKLETN 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2146 813 SMART rrm1_1 280 348 IPR000504 GO:0003723
Glsi08g2146 813 SMART rrm1_1 195 263 IPR000504 GO:0003723
Glsi08g2146 813 SMART rrm1_1 655 731 IPR000504 GO:0003723
Glsi08g2146 813 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 352 IPR000504 GO:0003723
Glsi08g2146 813 Gene3D - 278 376 IPR012677 -
Glsi08g2146 813 FunFam MEI2-like protein 5 isoform 2 183 277 - -
Glsi08g2146 813 PANTHER RNA RECOGNITION MOTIF-CONTAINING 38 771 - -
Glsi08g2146 813 CDD RRM2_MEI2_like 278 348 - -
Glsi08g2146 813 Pfam RNA recognition motif 2 653 749 IPR007201 -
Glsi08g2146 813 Gene3D - 183 277 IPR012677 -
Glsi08g2146 813 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 267 IPR000504 GO:0003723
Glsi08g2146 813 SUPERFAMILY RNA-binding domain, RBD 191 354 IPR035979 GO:0003676
Glsi08g2146 813 CDD RRM3_MEI2_like 656 741 IPR034454 -
Glsi08g2146 813 CDD RRM1_MEI2_like 193 269 IPR034453 -
Glsi08g2146 813 SUPERFAMILY RNA-binding domain, RBD 655 740 IPR035979 GO:0003676
Glsi08g2146 813 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Glsi08g2146 813 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 260 IPR000504 GO:0003723
Glsi08g2146 813 FunFam Protein MEI2-like 1 278 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2146 Glsi-ChrGlsi08 15563653 15569513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2146 189 421 Eukaryotic Initiation Factors Gene Family AT3G16380 25.000 6.81e-11 63.9