Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2116 ATGGTCGATAGTGAGAAACTGGGACATAGCTCCCACGGCAATGTCGATGGCGAGTTTTTGGATGCCACTTTTCAACAGCAATATTCTACTTCTTTGAAGAAGGATCAAATTGAGGAATCCCCTCCTCATGTCGTCAACGACCACAAGAGTCCCAAATCCCCTGCTGATGCATGCCAGGAGGAAGATCAAACTGTGTTTGATGAGGCTAATGATAAGAACGCGCCTGATACCAAAAATGATGATTCCAGTTTTAGTCAAATACCAGAAAACAAAAGCATTAGTGACAATACCCACAATGAGAATCAGCTTAAAGGTGCTAAATCCTTTTCACACGAGGAATCGTGGACTCCAAAGGCTAAAGAAAAGAATGTCCGAGATATGAAGAACGTGCTAAATGATTCTGAGACGACTGAGTATGACGAATCTGGTACGGTTCAGGAGCGGGCAGCATTTATGAAGGAGCTGGAGAATTTCTACAGAGCGAGGGCCGTGGAATTTAAACCCCCTAGGTTTTATGGAGAGCCTTTAAATTGCCTTAAGCTATGGAGAGCTGTTATCGGACTGGGTGGCTATGATGTGGCACTTCTAGAGTATGAGAAGCATAAGAGAGAGATTGGTGAGCTGCAGCTGCCTGTTAGATCATTCCTACCATCTTCAAGTGTGGAAAATACAAGTGTTTACCAGGCTCCCGGCCTAGGTAGGGCACGAAGGGATGCAGCATCCCGGGCAATGCAAGGTTGGCATGCTCAGCGGCTTCTTGGGTTTGGTGAGGCTGCAGAGCCTGTTATTAAGGACAAAAACTTGAATTCTACATCAAAGCGTGAAAAGAACATCAAAAGTATTGGTGCGATTAATAAACAGAGGACATCTGGTCTGGAGCATGCTGAGAGAGCTGCAAATATTGAAGGAGATAAGCAACTGGTCACAACAGTTGTGGACATTGGACCTCCAGCTGACTGGGTGAAGATCAGTGTGCAGGAAACCAAGGATTGTTTTGAGGTGTATGCACTAGTTCCTGGGCTTCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGCTGGCCGTCTTATTATAACAGGTCAGCCGGAGCAGATTGACAATCCATGGGGAATTACACCTTTCAAAAAGCGAAACTGTTTGATTGGAGCATGCGGTTTTCAGGTTGTGAGCTTACCTGCAAGGATTGATCCACTTCAGACATCTGCTGTTGTCAGCCTGCACGGTCGACTTTTTGGAGGCAGGGAGGGACGGACTTGTGCGTTTCATCTATCAAACATGGCGACTAAGTCCCCGGCCAGTTGTGTTGAAAACCCTCCTCCCAAACAAGTTTTGCCAGAGACCCCATTCTCCGAATCCAGAGATGGCGGTCGTACCGCCTCCGCATCCGCCGAGGCGAACGCAGTCCTCGTACCCAGCCACTCCAGATGGTTTTCATGGAATGGCATACACGAATGTGAGATTCGACATCTTCCTGAGTTTTTTCATTCTGTTTCGCCCTCCAAGAACCCTAGGGTTTACAAGTATTACAGGAATTCCATTATCAAGCATTTCAGAGATAATCCTGCCAGAAAGATCACCTTCACCGATGTCAGGAAAACACTTGTGGGGGATGTGGGTTCCGTCCGCAGAGTCTTTGATTTCCTGGAGTCATGGGGTTTGATCAATTACCAACCGTCCTCAGCGTTGACCAAGCCCTTTAAGTGGGAAGACAAGGAGACCAAGCCCGAAGCTGCACCTAATTCCATCGAATCATCAACTCCTATCCGAGAGACTTCCAAGAGAGTCTGCAGTGGTTGCAAAGCTGCCTGTACCATTGCATGCTTTGCTTGTGATAAGTATGATTTGACTCTCTGTGCAAGATGTTATGTCCGTGGCAATTATCGAGTTGGTGTGAGCTCTTCAGATTTCAGGCGAGTTGAGATCAGTGAGGAGACTAAGACAGATTGGACTGATAAGGAAATCTTGCATCTTCTGGAAGCCATTATGCATTATGGTGATGACTGGAAGAGGGTTGCCCAGCATGTTGGTGGTCGGACTGAGAGGGAATGTGTTTCTCATTTTATTAAGCTTCCTTTTGGGGAGCAATTTCTACATTATCAAGACTCTAGTGTGAGTAATGACAAAGGCAATCCATTAAACGAACATGTCTATGCTGAATGTGGATTGGAAAGTATTGGTTCTACAGAACCAAGTAAAAGAATGCGTCTAACACCTCTTGCTGATGCAAGCAATCCTATAATGGCGCAGGCTGCTTTCCTGTCTGCTTTGGCGGGGGTAGAGGTTGCACAAGCTGCTGCTCAAGCTGCAGTGACAACTCTATCTGAGGTTTACCAATCAACAAGAATAAATTATCGGTCACTTCCTAGAAATGCATTACAGCAGGATACTGATATTTCATCAAATGGGGGCACTACTTCAGATACGTTTGAATGGGCTCGAATGCATGCAATTACAAAGCTGGAGAAGGAAGAGTCAGATGTGGAAAAAGCAATTTCTGGAATTATCGAAAATCAGATGAAAAATATCCATGGCACGGTTGTTCAATTTGAAGATTTAGACCTGCTGTTGGAGAAAGAATGCCAGCAGTTGGAGCAAATGAAGAATATGCTTTACGTTGACAAGCTTACTCTTCTATTTCATAGACGATCTGCACCAAAAACTGGAGATCGCATAGAGGAGGATAATGTAGCACAGATTGATGACTGA 2706 0.4553 MVDSEKLGHSSHGNVDGEFLDATFQQQYSTSLKKDQIEESPPHVVNDHKSPKSPADACQEEDQTVFDEANDKNAPDTKNDDSSFSQIPENKSISDNTHNENQLKGAKSFSHEESWTPKAKEKNVRDMKNVLNDSETTEYDESGTVQERAAFMKELENFYRARAVEFKPPRFYGEPLNCLKLWRAVIGLGGYDVALLEYEKHKREIGELQLPVRSFLPSSSVENTSVYQAPGLGRARRDAASRAMQGWHAQRLLGFGEAAEPVIKDKNLNSTSKREKNIKSIGAINKQRTSGLEHAERAANIEGDKQLVTTVVDIGPPADWVKISVQETKDCFEVYALVPGLLREEVRVQSDPAGRLIITGQPEQIDNPWGITPFKKRNCLIGACGFQVVSLPARIDPLQTSAVVSLHGRLFGGREGRTCAFHLSNMATKSPASCVENPPPKQVLPETPFSESRDGGRTASASAEANAVLVPSHSRWFSWNGIHECEIRHLPEFFHSVSPSKNPRVYKYYRNSIIKHFRDNPARKITFTDVRKTLVGDVGSVRRVFDFLESWGLINYQPSSALTKPFKWEDKETKPEAAPNSIESSTPIRETSKRVCSGCKAACTIACFACDKYDLTLCARCYVRGNYRVGVSSSDFRRVEISEETKTDWTDKEILHLLEAIMHYGDDWKRVAQHVGGRTERECVSHFIKLPFGEQFLHYQDSSVSNDKGNPLNEHVYAECGLESIGSTEPSKRMRLTPLADASNPIMAQAAFLSALAGVEVAQAAAQAAVTTLSEVYQSTRINYRSLPRNALQQDTDISSNGGTTSDTFEWARMHAITKLEKEESDVEKAISGIIENQMKNIHGTVVQFEDLDLLLEKECQQLEQMKNMLYVDKLTLLFHRRSAPKTGDRIEEDNVAQIDD 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2116 901 MobiDBLite consensus disorder prediction 431 457 - -
Glsi08g2116 901 CDD ACD_sHsps-like 325 402 - -
Glsi08g2116 901 Pfam ARID/BRIGHT DNA binding domain 148 194 IPR001606 GO:0003677
Glsi08g2116 901 SMART bright_3 146 204 IPR001606 GO:0003677
Glsi08g2116 901 Gene3D - 644 694 - -
Glsi08g2116 901 FunFam SWI/SNF complex subunit SMARCC2 isoform c 474 561 - -
Glsi08g2116 901 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 646 694 IPR017930 -
Glsi08g2116 901 CDD SANT 649 690 IPR001005 -
Glsi08g2116 901 Pfam Myb-like DNA-binding domain 647 690 IPR001005 -
Glsi08g2116 901 MobiDBLite consensus disorder prediction 1 122 - -
Glsi08g2116 901 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 54 192 IPR045147 GO:0006357
Glsi08g2116 901 CDD ARID 147 193 - -
Glsi08g2116 901 ProSiteProfiles ARID domain profile. 145 239 IPR001606 GO:0003677
Glsi08g2116 901 SUPERFAMILY Homeodomain-like 465 566 IPR009057 -
Glsi08g2116 901 MobiDBLite consensus disorder prediction 105 122 - -
Glsi08g2116 901 SUPERFAMILY ARID-like 132 205 IPR036431 GO:0003677
Glsi08g2116 901 MobiDBLite consensus disorder prediction 79 104 - -
Glsi08g2116 901 Gene3D - 474 560 IPR036388 -
Glsi08g2116 901 Pfam SWIRM domain 471 556 IPR007526 GO:0005515
Glsi08g2116 901 ProSiteProfiles SANT domain profile. 644 695 IPR017884 -
Glsi08g2116 901 FunFam SWI/SNF complex subunit SMARCC2 isoform C 644 695 - -
Glsi08g2116 901 Gene3D - 135 229 IPR036431 GO:0003677
Glsi08g2116 901 MobiDBLite consensus disorder prediction 36 56 - -
Glsi08g2116 901 MobiDBLite consensus disorder prediction 20 35 - -
Glsi08g2116 901 SMART sant 645 693 IPR001005 -
Glsi08g2116 901 SUPERFAMILY Homeodomain-like 645 694 IPR009057 -
Glsi08g2116 901 ProSiteProfiles Myb-like domain profile. 641 691 IPR001005 -
Glsi08g2116 901 ProSiteProfiles SWIRM domain profile. 468 565 IPR007526 GO:0005515
Glsi08g2116 901 Pfam SWIRM-associated region 1 820 884 IPR032451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2116 Glsi-ChrGlsi08 14791571 14825298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2116 21 411 ARID Transcription Factor Family AT1G76510 48.198 1.44e-109 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Glsi08g2116 SWIRM 1.4e-25 CL0123