Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2115 ATGTCGGGATCTGAGACAGGAGTGATGACTAGTAGGGAGCCATTCACTGTGGGGCTGCAGAAAACTCCGGTACCAATACCATCACAGCCCCTCACACAAAACATGCGCTTAGCCTATGGTGCTGATGGCACAGCTGTTTACAAGCCCATCGGAGCAACATCGCCAACCTACCAGTCCTCGGCTGCCGTCACCGGTAGTATCGGCAATGGTACCGTAAGCGGGGTAGAAGTATCCGTCAGTGGTGCTATGTTGCACCAGGGAATTGATGTCAACATGGGTAGTGAGCAATTGAAGAGGAAGAGAGGGAGGCCAAGGAAATATGGGCCAGATGGCACCATTACATTAGGCTTGACGACACCGGTCGCCGTTAATCAGTCCAGTGGAGGGTTTTCTCCTCCTCCTTCAGCTGGTTCCACTTCACCCACTTCCCTGAAAAAAGCCAGAGGCAGACCCCCTGGTTCTAGTAAGAAGCAACAATTAGAGGCTCTAGGATCAGCAGGAGTTGGATTTACACCACATGTTATAATGGTGAAAGCTGGAGAGGATGTGTTATCAAAAATTATGTCTTTTTCCCAGCATGGTCCGAGGGCTGTTTGCATCTTATCAGCCACTGGAGCCATATCTAATGTTACACTTCGCCAACCTGCCACGTCTGGTGGAACTGTGACTTATGAGGGGCGGTTTGAAATCCTATCACTATCTGGTTCATTTCTTCTATCTGAAAATGGTGGTCAACGGAGCAGAACAGGTGGATTAAGTGTGTCTTTGTCAGGACCGGATGGCCGTGTTTTGGGTGGTGGAGTGGCAGGTCTTTTGACAGCTGCTTCCCCTATTCAGGTAGTTTTAGGGAGCTTCGTTGCAGATGGTCGCAAAGAGTCTCAGTCAGCAAACCAAGTGGAAACTTCAAGTGCCCCGCAAAAGCTTGCCGTTAGTAGCGGTATAGCAGGCCCGGGGCAAAGCAGCTCCCCATCACGGGGTACTCTTAGTGAATCCTCAGGCGGGCCTGGGAGCCCACTTAACCATAGTGCCGGACAAGGCATTTCAAGCATGCTGTGGAATTAG 1062 0.5085 MSGSETGVMTSREPFTVGLQKTPVPIPSQPLTQNMRLAYGADGTAVYKPIGATSPTYQSSAAVTGSIGNGTVSGVEVSVSGAMLHQGIDVNMGSEQLKRKRGRPRKYGPDGTITLGLTTPVAVNQSSGGFSPPPSAGSTSPTSLKKARGRPPGSSKKQQLEALGSAGVGFTPHVIMVKAGEDVLSKIMSFSQHGPRAVCILSATGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPIQVVLGSFVADGRKESQSANQVETSSAPQKLAVSSGIAGPGQSSSPSRGTLSESSGGPGSPLNHSAGQGISSMLWN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2115 353 Gene3D - 172 304 - -
Glsi08g2115 353 MobiDBLite consensus disorder prediction 117 145 - -
Glsi08g2115 353 MobiDBLite consensus disorder prediction 293 353 - -
Glsi08g2115 353 CDD DUF296 171 285 IPR005175 -
Glsi08g2115 353 ProSiteProfiles PPC domain profile profile. 166 307 IPR005175 -
Glsi08g2115 353 SMART AT_hook_2 145 157 IPR017956 GO:0003677
Glsi08g2115 353 SMART AT_hook_2 98 110 IPR017956 GO:0003677
Glsi08g2115 353 MobiDBLite consensus disorder prediction 90 160 - -
Glsi08g2115 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 63 343 IPR039605 GO:0003680
Glsi08g2115 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 287 - -
Glsi08g2115 353 FunFam AT-hook motif nuclear-localized protein 1-like 172 303 - -
Glsi08g2115 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 286 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2115 Glsi-ChrGlsi08 14776778 14779960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2115 1 344 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 55.096 1.89e-93 281