Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2104 ATGAATTGGTTTTTGGTTCTTTCTTCGGTGCTCCTATTTTTCAGAGTGTCTCCGTATGTGGGCTGCGATAATATCTCAAGACCCGCCTTTGTTCATATTGGAGCTATCTTCACCTTTGATTCTACCATTGGGAAGGTCGCTAAAATTGCCATAGAGGAGGCCGTGAAGGATGTGAACGCCAATGCAAGCATCCTCCGTGGAACTAAGCTGGCCATCACTATGCAAAATTCCAATTGCAGTGGTTTCGTCGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTAGTCGCAATAATTGGCCCACAATCTTCGGTAGTTGCCCACATAATATCCCATGTCGCAAATGAGCTCCAAGTCCCTCTATTGTCATTTGCGGCAACAGACCCTACCCTCTCTTCCCTGCAGTTCCCTTTTTTTGTCAGGACAACACAGAGTGATTTTTACCAAATGACTGCAGTTGCTGAAATCGTTGATTATTATGGTTGGAAGGAGGTCATTGCTATATACGTAGATGATGATTATGGACGAAATGGTGTGTCCGCATTAGATGATAAATTGGCAGCCAGGCGCTGTAGAATCTCCTACAAGGCAGGAATTAAGTCTGGACCTGGAGTTGATCGTGGTGAAATCACGAATTTGCTGGTCAAGGTGGCACTAATGCAATCTCGGGTCGTTGTTCTCCATGTAAATCCTGATTCAGGATTTATGGTTTTCAATGTTGCGCAATATCTTGGTATGACAGGGAATGATTATGTCTGGATAGCCACAGACTGGCTCTCCTCTGTTCTAGATTCAGCTTCTCTCCCTTCCCAGACAATGGATGTTCTGCAGGGTGTTATTGTCTTACGGCAATATTCACCTGATTCAGATAGAAAAAGAGCATTCTTCTCTAGGTGGAACAAGTTAACTGGTGGCTCTTTGGGTTTACATTCTTATGGTCTCTATGCATATGATTCTGTTTGGCTGCTTGCGCATGCTATTGATGCCTTCTTCAACCAGGGTGGGATCATATCATTTTCTAATGACTCTAGGATACAAGATGTTGACAGAGGTACTCTTAACCTTAAGGCAATGAGCGTTTTTGACAATGGAACTCTTCTGTTAAACAAGATACTGCGGAGCAACTTTGTTGGGTTAACAGGTCCTATGAAATTCGAGTCAGATAGATCTCTTGTTCGTCCTGCATATGATATTATTAATGTGGTGGGAACTGGGATTCGTCGGGTTGGTTACTGGTCCAACTATTCTGGTCTGTCAATTGTCCCTCCTGAGACATTGTATGCCAAGCCTCCTAATCGCTCAAGCCAACAACTGTATCATGTAATATGGCCGGGAGAAACATTATCAAAACCTCGTGGATGGGTTTTCCCAAATAATGGAAAACAATTGAGAATCGGTGTACCTATCCGAGTCAGTTTCCGTGAATTTGTATCGCCAGTGCGTGGAACTGATATGTTTAAAGGTTTCTGTATTGATGTATTCACAGCAGCTGTAAACTTGTTACCATATGCTGTTCCATATCGCTTTGTTCCATTTGGAGATGGTCATAGAAACCCAAGCTACACTGAACTAGTCAACTTGATCACCACAGGCCACTTTGATGGCGCTATTGGTGACATTGCCATTGTCACAAATCGAACGAAGATCGTAGATTTTACACAACCATATACTGCATCGGGACTCGTGGTGGTGGCCCCTTTTAAGAAAACGAACTCCGGTGGTTGGTCTTTCCTGCGGCCATTTACTCCTCTTATGTGGATTGTCACTGCTTGTTCCTTCTTTTTCATTGGGATAGTTGTATGGATTCTGGAGCATAGGATAAATGATGAGTTCAGGGGCCCACTTAAACAGCAAATTATAACCATGCTATGGTTTAGCTTGTCAACTCTGTTTTTTGCCCACAGAGAGAATACGATGAGTACTCTTGGTCGCTTGGTGTTACTCATATGGCTGTTTGTGGTTTTGATAATCAACTCCAGCTACACAGCAAGTCTGACATCAATCCTTACAGTGCAGCAGCTATCTTCTCCTATCAATGGAATAGACAGCTTAAAAGCTGGTGATGAAGCTATAGGGTACCAAGTGGGTTCATTCGCAGAACGTTATTTGAGTGAGGATATTGGAATATCCAAATCTAGGCTTGTTCCCCTCGGATCTCCTGAAGAATATGCTAAGGCACTACAGCTTGGTCCTGACAAAGGAGGTGTTGCTGCTATTGTTGATGAACGACCCTATGTGGAAAATTTCTTATCAACCCAGTGCACATTCAAAATTGTAGGTCAGGAGTTCACCAGAAGTGGCTGGGGGTTTGCATTCCCACGGGACTCCCCTTTGGCTGTTGATATGTCGACTGCAATTCTTCAACTTTCTGAAAATGGTGAACTGCAGCGGATTCATGATAAGTGGCTGATAAGAAGCAGCTGTAGTTTAGAAAATGCTGAAATTGATTCAGATCGGCTTCGGCTGAAAAGCTTCTGGGGTCTCTATCTTATGTGTGGGATAGCTTGCATTATTGCACTTTCCATATATTTCTTGCAGATTATGCTGCAGTTACGGCATTCTACTCCTACTGAACCTGCTTCTAATTCAAATGTGAGCTCAATTTCTGGACGTTTTCAAAGATTTCTTTCACTAATTGACGAGAAGGAAGACCGGTCAAAGAACGGAAGTAGGAAGAGGGATGCAGCCCCAACATCCTCAGAAGATGAATTGGGGAGGCAGTTCAAGAGGACACACACAAACAACTCCTCGCTTCAACTCAGTTAA 2769 0.4348 MNWFLVLSSVLLFFRVSPYVGCDNISRPAFVHIGAIFTFDSTIGKVAKIAIEEAVKDVNANASILRGTKLAITMQNSNCSGFVGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELQVPLLSFAATDPTLSSLQFPFFVRTTQSDFYQMTAVAEIVDYYGWKEVIAIYVDDDYGRNGVSALDDKLAARRCRISYKAGIKSGPGVDRGEITNLLVKVALMQSRVVVLHVNPDSGFMVFNVAQYLGMTGNDYVWIATDWLSSVLDSASLPSQTMDVLQGVIVLRQYSPDSDRKRAFFSRWNKLTGGSLGLHSYGLYAYDSVWLLAHAIDAFFNQGGIISFSNDSRIQDVDRGTLNLKAMSVFDNGTLLLNKILRSNFVGLTGPMKFESDRSLVRPAYDIINVVGTGIRRVGYWSNYSGLSIVPPETLYAKPPNRSSQQLYHVIWPGETLSKPRGWVFPNNGKQLRIGVPIRVSFREFVSPVRGTDMFKGFCIDVFTAAVNLLPYAVPYRFVPFGDGHRNPSYTELVNLITTGHFDGAIGDIAIVTNRTKIVDFTQPYTASGLVVVAPFKKTNSGGWSFLRPFTPLMWIVTACSFFFIGIVVWILEHRINDEFRGPLKQQIITMLWFSLSTLFFAHRENTMSTLGRLVLLIWLFVVLIINSSYTASLTSILTVQQLSSPINGIDSLKAGDEAIGYQVGSFAERYLSEDIGISKSRLVPLGSPEEYAKALQLGPDKGGVAAIVDERPYVENFLSTQCTFKIVGQEFTRSGWGFAFPRDSPLAVDMSTAILQLSENGELQRIHDKWLIRSSCSLENAEIDSDRLRLKSFWGLYLMCGIACIIALSIYFLQIMLQLRHSTPTEPASNSNVSSISGRFQRFLSLIDEKEDRSKNGSRKRDAAPTSSEDELGRQFKRTHTNNSSLQLS 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2104 922 Gene3D - 574 705 - -
Glsi08g2104 922 FunFam Glutamate receptor 459 574 - -
Glsi08g2104 922 Pfam Bacterial extracellular solute-binding proteins, family 3 486 804 IPR001638 -
Glsi08g2104 922 Gene3D - 146 419 - -
Glsi08g2104 922 CDD GluR_Plant 462 804 - -
Glsi08g2104 922 FunFam Glutamate receptor 575 705 - -
Glsi08g2104 922 Pfam Receptor family ligand binding region 49 404 IPR001828 -
Glsi08g2104 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 317 329 - -
Glsi08g2104 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 104 132 - -
Glsi08g2104 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Glsi08g2104 922 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 866 IPR015683 -
Glsi08g2104 922 MobiDBLite consensus disorder prediction 881 922 - -
Glsi08g2104 922 PIRSF IGluLR_plant 1 921 IPR017103 -
Glsi08g2104 922 SUPERFAMILY Periplasmic binding protein-like II 439 805 - -
Glsi08g2104 922 SUPERFAMILY Periplasmic binding protein-like I 26 456 IPR028082 -
Glsi08g2104 922 CDD PBP1_GABAb_receptor_plant 32 423 IPR044440 -
Glsi08g2104 922 Pfam Ligand-gated ion channel 805 837 IPR001320 GO:0015276|GO:0016020
Glsi08g2104 922 SMART GluR_14 465 806 IPR001320 GO:0015276|GO:0016020
Glsi08g2104 922 PRINTS Metabotropic glutamate GPCR signature 166 183 IPR000337 GO:0004930|GO:0007186|GO:0016020
Glsi08g2104 922 PRINTS Metabotropic glutamate GPCR signature 99 125 IPR000337 GO:0004930|GO:0007186|GO:0016020
Glsi08g2104 922 PRINTS Metabotropic glutamate GPCR signature 150 166 IPR000337 GO:0004930|GO:0007186|GO:0016020
Glsi08g2104 922 PRINTS Metabotropic glutamate GPCR signature 131 150 IPR000337 GO:0004930|GO:0007186|GO:0016020
Glsi08g2104 922 FunFam Glutamate receptor 701 808 - -
Glsi08g2104 922 MobiDBLite consensus disorder prediction 881 910 - -
Glsi08g2104 922 FunFam Glutamate receptor 146 297 - -
Glsi08g2104 922 Gene3D - 459 573 - -
Glsi08g2104 922 Gene3D - 751 811 - -
Glsi08g2104 922 Gene3D - 49 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2104 Glsi-ChrGlsi08 14734666 14738053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2104 26 917 Ion Channels AT1G42540 67.696 0.0 1275