Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2099 ATGGGCCTCCCTGACACCAGGGCTCCTGCTCAATTGAACCCAACCCACGACATGTCACCTCCAATTCATCATCCCGTTTTCGACATGAAAGGCGGAAAATCGAAGACTGAATCTAAGAGAGCCGATGCCAAGCTTGCTGTGAATAAGAAAGGTGGCGGCGCCACCACCAAGGCGGCCAGGAAACCAAGTAAGGGCAAGGCGGCGAAAGACCCTAACAAGCCAAAGAGACCGCCCAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTCAACAAGGAAAACCCTGATAACAAAGCAGTGTCCGCTGTTGGCAAAGCCGCTGGGGCAAAATGGAAGTCCTTGTCCGATGCTGAGAAAGCACCATATGCAGCTAAGGCTGAGAAACGAAAGGCTGAATATGAGAAGAATATGAAAGCCTATAACAAGAAACAGGCTGAAGGTCCCACTGCCGCAGAGGAAGAAGAATCTGAGAAATCTATTTCTGAGGTGAATGATGAAGAGGAAGGAGATGATGAGGGCAGTGACGAGGAGGAGGATGACGAGTAG 552 0.5 MGLPDTRAPAQLNPTHDMSPPIHHPVFDMKGGKSKTESKRADAKLAVNKKGGGATTKAARKPSKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKSLSDAEKAPYAAKAEKRKAEYEKNMKAYNKKQAEGPTAAEEEESEKSISEVNDEEEGDDEGSDEEEDDE 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2099 183 SMART hmgende2 73 144 IPR009071 -
Glsi08g2099 183 MobiDBLite consensus disorder prediction 28 46 - -
Glsi08g2099 183 Coils Coil 125 145 - -
Glsi08g2099 183 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 29 178 IPR031061 -
Glsi08g2099 183 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 74 143 IPR009071 -
Glsi08g2099 183 MobiDBLite consensus disorder prediction 108 183 - -
Glsi08g2099 183 MobiDBLite consensus disorder prediction 160 183 - -
Glsi08g2099 183 Pfam HMG (high mobility group) box 74 143 IPR009071 -
Glsi08g2099 183 Gene3D High mobility group box domain 57 167 IPR036910 -
Glsi08g2099 183 SUPERFAMILY HMG-box 62 152 IPR036910 -
Glsi08g2099 183 MobiDBLite consensus disorder prediction 1 80 - -
Glsi08g2099 183 MobiDBLite consensus disorder prediction 123 159 - -
Glsi08g2099 183 CDD HMG-box_AtHMGB1-like 75 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2099 Glsi-ChrGlsi08 14705549 14707631 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Glsi08g2099 HMG_box 1.7e-24 CL0114