Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2095 ATGGGAGACGGTGCTGTGTCACCCGGTACTTTGCTGGAAGCTCCGGTGGATTTCGATTACATGGATGAGCTCTTTTTTGATGGATGTTGGTTGGAAAGCACTACAGATGGATCTGATTTCCTGCTGCAAAGCCCCTCTACCTCTAATCCCCTCTTTGACCCTTCATTTTCATCGCCTGCCTTGGACCCTAATGAAGGGAGGCAAAGTCCGTTGTTTAATGAATTCCCAGAAACTCCTTTCGATACTCGATCGATTACCAAGGATATAATTGATGTTGCAGGTGCTTCTAATCAATCTGAAAGCTCTCAAGTTGTCAGAAGGTGGTGGATTGGACCTAATCCAAACCCTTCATCTTCTGTATTGGAGAGACTAATTAGGGCACTTTTCTCTATCGGAGATTTCAATAGAAACAAAGATGTGCTCATACAAATATGGGTGCCAAGTAATAGAGAAGGTAGGAGGATTCTAACCACTAATGATCTTCCCTTCTCACTTGAAACCAGCTGTCCAAATCTTGCAAAGTACCGAGAAATCTCTGTGAAATATGAGTTTTCAGCTGAGGAGGACTCTGAGGGATTGTTGGAAGGATTGCCTAGTCGAGTTTTCATTGGAAGGGTTCCTGAGTGGACTCCTGATGTTCGATTTTTCAGAAGCGATGAGTACCCACGAGTTGACCATGCTCAACAGTGCGATGTAAGTGGAAGTTTAGCCTTTCCAATATTTGAGCAAGGTAGCAGGACTTGCTTGGGTGTTATTGAGGTTGTCATGACTACCCAGCAGATCAAGTGTTGTCCCCAACTTGAAACTGTTTGCAAAGCGCTTGAGGCTGTTGATCTTGGAGGCTCAAAACTTTTTAGTATGCAGAATATGAAGGCATGCAACAATTCCTATGAAGCTGCACTACCTGAGATTCAAGAGGTGTTGAAATCCGCATGTGAAATGCACAAATTACCTTTAGCTCAGACTTGGGTCCCATGCATCCAACAAGGTAAAGAGGGATGCCGGCACTCAGATGATAATTATCTACATTGTATATCTCCAGTGGAGAAGGCTTGTTATGTTGGTGATCCCTGTGTCCGGGTTTTTCATGAGGTTTGCTCTGAACATCACTTGTTAAAAGGTCAAGGGGTTGCTGGTGGAGCTTTTATGACCAATCAACCATGCTTCTCAACTGACCTAACTTCCTTAAGCAAGACAGACTATCCACTGTCTCACCATGCAAGGATTTTCGGGTTGCAGGCTGCTGTTGCTATCCGCCTGCGAAGCATCCATAGCAGTATAGATGACTTTGTCCTTGAGTTCTTCTTGCCTGTAAATTGCACTGACGGTGAAGAACAGAAGAAGATGCTTACTTCATTGTCCATGATTATAAAAAGGTTTTGTCATAGCTTACGGGTCATAACAGATAAAGAATTGGAGGAGGAAACTAACTTGCTAGTTGATGAAGTGATAGTCCCTGCAGATAGTAGATCTGCCAGGACCGCAAGTTGGATGGAGATCCCACAGAGTGGGACCGTTACCTCATTGGGCACCAAAGAAAAGTTAAGCGAGACAGTTGATAGAAAGTTCTCTGACCTATGGCGGCAGCAGCAGCAAGAAAACTCTATTTTAAAAGGAAACATCGACTGCGTTGGGGAGTGTTCTAATTTTGGAGAGGGTAGTTTACCGAGTGTGGGTACAAGTAAAATGAGAGATAAAAGACGGACCAAAGCAGAGAAAACTATCACCCTGCAAGTTCTTCGGCAATATTTTGCTGGAAGCCTAAAAGATGCTGCAAAGAACATTGGTGTTTGTACTACAACTTTGAAAAGGATCTGCCGCCAGCATGGGATAAAGCGTTGGCCTTCACGAAAGATCAAGAAGGTTGGTCACTCCTTACAGAAACTTCAACTCGTCATCGACTCAGTTCAAGGTGCCTCTAGTGCTTTTCAAATAGATTCCTTCTACTCAAACTTTCCGGAACTAGCCTCTCCAAATTTGCCAGGAGCCAGCTTCTTAACTTCAAAGCAAAGTGATCGTCCACATCCATCAAGCACAGGGCCTGATCCTGGCTTGCTGAACGCCGAAGCTGCTGCATCAAAATCACCCTCGTCTTCAGGAAGTCAGAGTTCCACTTCAAGCCATTCCTGTTCCAACATGTCAGAGCGGCGGCATTATGCACAAAATCTTGCTGGTAGCAAAGTTTATATGGTTGGAGAAAGTGTGTTGAAGAGGAACAGAAGTGAAGCCGAGCTAAAAAGCTTGAGTCAAGATAGAGCAACGCCCTTACCAAGATCCCTAAGCCAGGAAACACTTGGGGAACATCATGAAACTCTGTATCACCGACCATCGTTGAAAAGCAGGCACAAAGCACCTCAAAAGAATACTCAGAGAGTAAAAGTCACATATAGAGATGAGAAAGCCCGGTTTCGGATGCCCAAGAATTGGGGTTACGTAGATCTTTTGCAGGACATTGCTAGGCGATTTAACATAGATGACATGAGCAAATTCGATATCAAGTATTTGGACGATGACTCTGAGTGGGTATTACTGACTTGTGATGCTGATCTAGAGGAGTGCATTGATGTTTGTCAATCTTCAAAGAGCAGTGTGATCAAACTTTGCCTCCAAGTTTCGAATCAGTGTATGAGAAGTTTAGGTAGCAGTGGGCTTCTTTATTGTAAATAA 2667 0.4398 MGDGAVSPGTLLEAPVDFDYMDELFFDGCWLESTTDGSDFLLQSPSTSNPLFDPSFSSPALDPNEGRQSPLFNEFPETPFDTRSITKDIIDVAGASNQSESSQVVRRWWIGPNPNPSSSVLERLIRALFSIGDFNRNKDVLIQIWVPSNREGRRILTTNDLPFSLETSCPNLAKYREISVKYEFSAEEDSEGLLEGLPSRVFIGRVPEWTPDVRFFRSDEYPRVDHAQQCDVSGSLAFPIFEQGSRTCLGVIEVVMTTQQIKCCPQLETVCKALEAVDLGGSKLFSMQNMKACNNSYEAALPEIQEVLKSACEMHKLPLAQTWVPCIQQGKEGCRHSDDNYLHCISPVEKACYVGDPCVRVFHEVCSEHHLLKGQGVAGGAFMTNQPCFSTDLTSLSKTDYPLSHHARIFGLQAAVAIRLRSIHSSIDDFVLEFFLPVNCTDGEEQKKMLTSLSMIIKRFCHSLRVITDKELEEETNLLVDEVIVPADSRSARTASWMEIPQSGTVTSLGTKEKLSETVDRKFSDLWRQQQQENSILKGNIDCVGECSNFGEGSLPSVGTSKMRDKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSNFPELASPNLPGASFLTSKQSDRPHPSSTGPDPGLLNAEAAASKSPSSSGSQSSTSSHSCSNMSERRHYAQNLAGSKVYMVGESVLKRNRSEAELKSLSQDRATPLPRSLSQETLGEHHETLYHRPSLKSRHKAPQKNTQRVKVTYRDEKARFRMPKNWGYVDLLQDIARRFNIDDMSKFDIKYLDDDSEWVLLTCDADLEECIDVCQSSKSSVIKLCLQVSNQCMRSLGSSGLLYCK 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2095 888 Pfam PB1 domain 790 871 IPR000270 GO:0005515
Glsi08g2095 888 SMART PB1_new 789 872 IPR000270 GO:0005515
Glsi08g2095 888 MobiDBLite consensus disorder prediction 663 677 - -
Glsi08g2095 888 PANTHER PROTEIN NLP8 92 882 IPR045012 GO:0003700
Glsi08g2095 888 MobiDBLite consensus disorder prediction 663 714 - -
Glsi08g2095 888 CDD PB1_NLP 791 870 IPR034891 -
Glsi08g2095 888 ProSiteProfiles RWP-RK domain profile. 561 642 IPR003035 -
Glsi08g2095 888 MobiDBLite consensus disorder prediction 743 791 - -
Glsi08g2095 888 SUPERFAMILY CAD & PB1 domains 780 873 - -
Glsi08g2095 888 Pfam RWP-RK domain 574 622 IPR003035 -
Glsi08g2095 888 MobiDBLite consensus disorder prediction 691 714 - -
Glsi08g2095 888 ProSiteProfiles PB1 domain profile. 789 872 IPR000270 GO:0005515
Glsi08g2095 888 Gene3D - 784 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2095 Glsi-ChrGlsi08 14694629 14698121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2095 16 874 NLP Transcription Factor Family AT1G20640 49.540 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Glsi08g2095 PB1 1.8e-18 CL0072