Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2078 ATGGCGGGAGATAAATCGGACACCGTGGTCTATCTTCATGGGGACCTTGATTTGAAAATCATTGAGGCTCGGTGTTTGCCAAACATGGACTTGTTTACGGAGCGTCTCCGTAGACTCTTCGCCGTCTTCAACTCCTGTACTGTTTCGTTATCCGGTCAACAGAAACGCCATAGTCACGCAAAAATCATTACCAGCGATCCTTACGTCAGTGTTTGCCTTGCCAGAGCTACGGTGGCTCGTACTCGTGTTATCTCCAACTCCCAGAGCCCTACGTGGAATGAGCATTTTAAAATCCCTCTGGCTCATCCCGTCTCCCAGGTGGAGTTCTACGTCAAAGACAATGACTTATTCGGCGCTGATCTCATAGGGATCGCTTCCGTCTCTGCCGAGAGAATCCTATCTGGTGAAGCTATCAGTGATTGGTTCCCCATAATTGGTTCATTTGGCAAACCTCCTAAACCTGATTGTGCCATTCGTCTCGAGATGAAATTTACCAAATGCGAGGATAATCCTCTCTACCGCTACGGCATTGCAGCCAATCCGGAAAATTTCGGAGTCCAGGATTCTTATTTTCCGGTGCGTCATGGAGGATCGGTCACGTTATATCAGGATGCACACGTTCCTGATTCGACGCTGCCGGAAATAGAATTGGACAATGGCATTGTCTTTCAGCACGGCAGATGTTGGGAAGATATATGTCATGCAATTTTGGAAGCGCATCATTTGGTTTACATTGTTGGTTGGTCCATCTATCATAAGGTGAAGCTGGTGAGAGAGCCCACGAGGCCCTTACCTAGCGGGGGGAATTTGAATTTGGGGGAGTTGCTAAAGTACAAGTCCCAAGAAGGTGTGCGAGTTTTACTATTGGTTTGGGATGACAAGACTTCACACAGCAGATTTTTCATTAATACGGCTGGAGTAATGCAAACTCATGATGAAGAAACTCGAAAATTTTTCAAGCACTCTTCGGTTTCATGTGTGCTGTCACCTCGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAGCAGGCATGCTTTTGTAGCTTTTCCATATATTTTTGTGTTGTTGGGACTCTCTTTACACATCATCAGAAATGTGTGATTGTGGATACTCAAGCACATGGAAATAACCGCAAGATAACTGCATTTATTGGTGGTCTAGACCTTTGTGATGGCCGGTACGATACACCCGAGCATCGACTTTTCTGGGATCTTGACACTGTTTATAAGGATGATTATCACAACCCCACATTTTCTGCTGGAACCAAGGGTCCAAGGCAACCATGGCACGATTTACATTGCAAAATTGAGGGGCCTGCTGCATATGATATACTCACTAATTTTGAGCAGCGCTGGAGAAAAGCCACCAAATGGTCTGAGTTGGGTCAAAAATTTAAAAGAGTATCTCATTGGCATGATGATTCTTTGATAAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCTGCATTAACTCCAAATGATGATCCAGAATTACGGGTTTCAAAGGAGGATGATCCTGAAAACTGGCATGTTCAGGTTTTTCGGTCAATAGATTCAGGTTCTTTGAAAGGATTTCCTAAGAATTTTGATGAAGCTGAGGCTCAGAACCTTGTTTGTGCCAAAAATTTGGTCATAGACAAGAGTATTCAAACAGCATATATACAGGCGATTAGATCTGCTCAACATTTTATATACATTGAGAATCAATATTTCCTTGGATCATCTTTTGCGTGGCCATCTTACAAAGAAGCAGGTGCTGATAATTTAGTTCCCATGGAGTTGGCATTAAAGATTGTCAGTAAAATTAGAGCCAATGAGAGATTTGCTGTCTATGTTGTCATACCAATGTGGCCTGAAGGTGTCCCTTCTTCTGCCTCAGTGCAAGAGATTCTCTTTTGGCAGGGACAAACTATGCAAATGATGTATGAAATTATAGCACAAGAGTTGAAATCCATGCACTTTGACAATAGCTGTCCACAAGATTACCTCAATTTCTACTGTCTGGGAAATCGAGAGAATTTGCCAACTGAAATTTCAAGTCCGAGCAATTTACCTTCAAATAACGGTGATACGGTTTCAGCTTCACAAAAGTTCCAACGGTTTATGATTTACGTGCACGCCAAGGGAATGATTGTGGATGATGAGTATGTGATACTTGGGTCTGCTAATATCAATCAACGATCTTTGGCCGGTTCGAGAGATACTGAGATAGCAATGGGTGCATATCAACCCCATCATACATGGGGAAGGAAGAAGGCACATCCTCATGGTCAGGTGTATGGGTATAGAATGTCCTTGTGGGCAGAACATTTGGGGGTCCCGGATGCTTGCTTCAAGGACCCTGAAAGTTTGGATTGCGTGAAGAGTGTGAACAAGATTGCCGAAGACAACTGGATGAAGTACACAGCTGAGGATTTTACCCCATTGCAGGGGCACCTCTTGAAATACCCGATCCAAGTAGATGCCAATGGGAAGGTACGCCCCTTACCTGGATTTGAATCTTTCCCAGATGTCGGGGGCAAGGTACTCGGCTCCCGGAGTACCCTTCCTGATGCCCTCACTACATAG 2571 0.4419 MAGDKSDTVVYLHGDLDLKIIEARCLPNMDLFTERLRRLFAVFNSCTVSLSGQQKRHSHAKIITSDPYVSVCLARATVARTRVISNSQSPTWNEHFKIPLAHPVSQVEFYVKDNDLFGADLIGIASVSAERILSGEAISDWFPIIGSFGKPPKPDCAIRLEMKFTKCEDNPLYRYGIAANPENFGVQDSYFPVRHGGSVTLYQDAHVPDSTLPEIELDNGIVFQHGRCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTRPLPSGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSRFFINTAGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQACFCSFSIYFCVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRLFWDLDTVYKDDYHNPTFSAGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWRKATKWSELGQKFKRVSHWHDDSLIKLERISWILSPSALTPNDDPELRVSKEDDPENWHVQVFRSIDSGSLKGFPKNFDEAEAQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSFAWPSYKEAGADNLVPMELALKIVSKIRANERFAVYVVIPMWPEGVPSSASVQEILFWQGQTMQMMYEIIAQELKSMHFDNSCPQDYLNFYCLGNRENLPTEISSPSNLPSNNGDTVSASQKFQRFMIYVHAKGMIVDDEYVILGSANINQRSLAGSRDTEIAMGAYQPHHTWGRKKAHPHGQVYGYRMSLWAEHLGVPDACFKDPESLDCVKSVNKIAEDNWMKYTAEDFTPLQGHLLKYPIQVDANGKVRPLPGFESFPDVGGKVLGSRSTLPDALTT 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2078 856 FunFam Phospholipase D delta 219 474 - -
Glsi08g2078 856 Gene3D Endonuclease Chain A 222 476 - -
Glsi08g2078 856 CDD C2_plant_PLD 9 165 - -
Glsi08g2078 856 SMART pld_4 702 729 IPR001736 GO:0003824
Glsi08g2078 856 SMART pld_4 358 393 IPR001736 GO:0003824
Glsi08g2078 856 Gene3D C2 domain 9 165 IPR035892 -
Glsi08g2078 856 PANTHER PHOSPHOLIPASE D 6 847 IPR015679 -
Glsi08g2078 856 PIRSF PLD_plant 1 856 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Glsi08g2078 856 SMART C2_3c 15 141 IPR000008 -
Glsi08g2078 856 SUPERFAMILY Phospholipase D/nuclease 191 464 - -
Glsi08g2078 856 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 358 393 IPR001736 GO:0003824
Glsi08g2078 856 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824
Glsi08g2078 856 Pfam Phospholipase D C terminal 776 846 IPR024632 -
Glsi08g2078 856 FunFam Phospholipase D 517 748 - -
Glsi08g2078 856 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 166 IPR035892 -
Glsi08g2078 856 ProSiteProfiles C2 domain profile. 1 142 IPR000008 -
Glsi08g2078 856 Pfam C2 domain 14 144 IPR000008 -
Glsi08g2078 856 Gene3D Endonuclease Chain A 519 748 - -
Glsi08g2078 856 Pfam Phospholipase D Active site motif 703 729 IPR001736 GO:0003824
Glsi08g2078 856 Pfam Phospholipase D Active site motif 359 393 IPR001736 GO:0003824
Glsi08g2078 856 SUPERFAMILY Phospholipase D/nuclease 550 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2078 Glsi-ChrGlsi08 14559841 14566031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2078 1 693 Phospholipase D Gene Family (Wang group) AT4G35790 66.199 0.0 974
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g2078 08 14559841 14566031 Glsi08g2078 08 14559841 14566031 ECH