Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2070 ATGCTCGATTCCGTTCTTTTGGCACTTTTCCTGCCCTGTCTCGGCATGAGCGCCGTCTTCATGGTCTACATGTGCCTTCTCTGGTACGCCACTACCCACCAGCCCGATCTCAGGCTACCGGTGAAGGCCGTCTCCGAAAAGGGCCTGTCGGCTTCGGATCTGGAGAAGTTGCCCAAAATCACAGGAAAAGAGCTGGTCATGGGTTCTGAATGTGCCGTGTGCCTGGACGAGATCGAAAACGAGCAACCGGCTCGACTGGTTCCTGGTTGCAACCACGGGTTCCATGTGGAATGCGCCGACGCATGGCTTTCCCAGCATCCTCTGTGTCCGGTTTGTAGAGCGAAGCTCGATCCTCAGGTTTTCAATTCTTCTGAAAACCCATGCTGA 387 0.5504 MLDSVLLALFLPCLGMSAVFMVYMCLLWYATTHQPDLRLPVKAVSEKGLSASDLEKLPKITGKELVMGSECAVCLDEIENEQPARLVPGCNHGFHVECADAWLSQHPLCPVCRAKLDPQVFNSSENPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2070 128 Pfam Ring finger domain 70 113 IPR001841 -
Glsi08g2070 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Glsi08g2070 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 123 - -
Glsi08g2070 128 SUPERFAMILY RING/U-box 70 119 - -
Glsi08g2070 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 119 IPR013083 -
Glsi08g2070 128 SMART ring_2 71 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2070 Glsi-ChrGlsi08 14516475 14516861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2070 1 128 C3H Transcription Factor Family AT5G42200 53.676 6.84e-46 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0102 10 762511 762897 Glsi08g2070 08 14516475 14516861 CCT
Glsi08g2070 08 14516475 14516861 Glsi08g2070 08 14516475 14516861 ECH